Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 AC103564.2-201ENST00000432853 1299 ntBASIC18.42■□□□□ 0.54
PTPN9P43378 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 AC104819.1-201ENST00000504587 486 ntBASIC18.42■□□□□ 0.54
PTPN9P43378 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.42■□□□□ 0.54
PTPN9P43378 AP000867.3-201ENST00000524675 377 ntBASIC18.42■□□□□ 0.54
PTPN9P43378 AC074051.2-201ENST00000565115 352 ntBASIC18.42■□□□□ 0.54
PTPN9P43378 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.42■□□□□ 0.54
PTPN9P43378 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.42■□□□□ 0.54
PTPN9P43378 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
PTPN9P43378 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.42■□□□□ 0.54
PTPN9P43378 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PTPN9P43378 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PTPN9P43378 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.41■□□□□ 0.54
PTPN9P43378 TP73-AS1-210ENST00000637775 1455 ntBASIC18.41■□□□□ 0.54
PTPN9P43378 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PTPN9P43378 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
PTPN9P43378 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 MINOS1P3-201ENST00000457048 203 ntBASIC18.41■□□□□ 0.54
PTPN9P43378 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.41■□□□□ 0.54
PTPN9P43378 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
PTPN9P43378 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PTPN9P43378 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PTPN9P43378 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN9P43378 BCL2-203ENST00000589955 5011 ntBASIC18.41■□□□□ 0.54
PTPN9P43378 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PTPN9P43378 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.4■□□□□ 0.54
PTPN9P43378 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.4■□□□□ 0.54
PTPN9P43378 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
PTPN9P43378 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.4■□□□□ 0.54
PTPN9P43378 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.4■□□□□ 0.54
PTPN9P43378 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.4■□□□□ 0.54
PTPN9P43378 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.4■□□□□ 0.54
PTPN9P43378 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.4■□□□□ 0.54
PTPN9P43378 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN9P43378 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
PTPN9P43378 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
PTPN9P43378 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTPN9P43378 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTPN9P43378 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.39■□□□□ 0.54
PTPN9P43378 AC138932.1-201ENST00000534164 6830 ntBASIC18.39■□□□□ 0.54
PTPN9P43378 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.39■□□□□ 0.53
PTPN9P43378 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.39■□□□□ 0.53
PTPN9P43378 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PTPN9P43378 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.39■□□□□ 0.53
PTPN9P43378 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.39■□□□□ 0.53
PTPN9P43378 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN9P43378 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
PTPN9P43378 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
PTPN9P43378 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN9P43378 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms