Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFC3P40938 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFC3P40938 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFC3P40938 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
RFC3P40938 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
RFC3P40938 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RFC3P40938 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RFC3P40938 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RFC3P40938 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.22■□□□□ 0.19
RFC3P40938 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.22■□□□□ 0.19
RFC3P40938 KRT18P67-201ENST00000432816 1264 ntBASIC16.22■□□□□ 0.19
RFC3P40938 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.22■□□□□ 0.19
RFC3P40938 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.22■□□□□ 0.19
RFC3P40938 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 KRT8P47-201ENST00000604727 1398 ntBASIC16.22■□□□□ 0.19
RFC3P40938 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RFC3P40938 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.22■□□□□ 0.19
RFC3P40938 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFC3P40938 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.21■□□□□ 0.19
RFC3P40938 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.21■□□□□ 0.19
RFC3P40938 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.21■□□□□ 0.19
RFC3P40938 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RFC3P40938 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RFC3P40938 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
RFC3P40938 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 AL031284.1-201ENST00000419297 478 ntBASIC16.21■□□□□ 0.19
RFC3P40938 AC007967.3-201ENST00000434308 558 ntBASIC16.21■□□□□ 0.19
RFC3P40938 RNPS1P1-201ENST00000507437 918 ntBASIC16.21■□□□□ 0.19
RFC3P40938 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.21■□□□□ 0.19
RFC3P40938 AL049840.3-201ENST00000602669 611 ntBASIC16.21■□□□□ 0.19
RFC3P40938 AC064862.7-201ENST00000604520 867 ntBASIC16.21■□□□□ 0.19
RFC3P40938 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
RFC3P40938 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.21■□□□□ 0.19
RFC3P40938 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.21■□□□□ 0.19
RFC3P40938 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFC3P40938 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RFC3P40938 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.21■□□□□ 0.18
RFC3P40938 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RFC3P40938 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RFC3P40938 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
RFC3P40938 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.2■□□□□ 0.18
RFC3P40938 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.2■□□□□ 0.18
RFC3P40938 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.2■□□□□ 0.18
RFC3P40938 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.2■□□□□ 0.18
RFC3P40938 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms