Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDH3P22223 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CDH3P22223 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
CDH3P22223 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDH3P22223 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDH3P22223 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.39■□□□□ 0.37
CDH3P22223 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 PCDHA12-202ENST00000613593 2588 ntBASIC17.38■□□□□ 0.37
CDH3P22223 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 AC246785.2-201ENST00000432512 513 ntBASIC17.38■□□□□ 0.37
CDH3P22223 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.38■□□□□ 0.37
CDH3P22223 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.38■□□□□ 0.37
CDH3P22223 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 AC099336.1-202ENST00000602961 463 ntBASIC17.38■□□□□ 0.37
CDH3P22223 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 AC009154.2-201ENST00000621177 724 ntBASIC17.38■□□□□ 0.37
CDH3P22223 AL691432.3-201ENST00000621860 400 ntBASIC17.38■□□□□ 0.37
CDH3P22223 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 AC046158.3-201ENST00000624947 2558 ntBASIC17.38■□□□□ 0.37
CDH3P22223 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CDH3P22223 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH3P22223 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 OR6D1P-202ENST00000641007 5290 ntBASIC17.38■□□□□ 0.37
CDH3P22223 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH3P22223 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CDH3P22223 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CDH3P22223 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CDH3P22223 AC008894.3-201ENST00000624324 3103 ntBASIC17.37■□□□□ 0.37
CDH3P22223 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CDH3P22223 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH3P22223 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CDH3P22223 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CDH3P22223 MINOS1P3-201ENST00000457048 203 ntBASIC17.37■□□□□ 0.37
CDH3P22223 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.37■□□□□ 0.37
CDH3P22223 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.37■□□□□ 0.37
CDH3P22223 AC138894.3-201ENST00000603787 634 ntBASIC17.37■□□□□ 0.37
CDH3P22223 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CDH3P22223 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CDH3P22223 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH3P22223 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CDH3P22223 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH3P22223 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CDH3P22223 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH3P22223 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH3P22223 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CDH3P22223 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH3P22223 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH3P22223 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CDH3P22223 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH3P22223 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CDH3P22223 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH3P22223 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms