Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 IGHV3-47-201ENST00000425060 335 ntBASIC17.98■□□□□ 0.47
HLA-DQB2P05538 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 LINC01451-201ENST00000623792 534 ntBASIC17.98■□□□□ 0.47
HLA-DQB2P05538 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 PP12613-201ENST00000424958 2230 ntBASIC17.98■□□□□ 0.47
HLA-DQB2P05538 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.98■□□□□ 0.47
HLA-DQB2P05538 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 FZD10-202ENST00000539839 3282 ntBASIC17.97■□□□□ 0.47
HLA-DQB2P05538 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 AC005104.2-201ENST00000427818 678 ntBASIC17.97■□□□□ 0.47
HLA-DQB2P05538 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 BNIP3P18-201ENST00000593976 575 ntBASIC17.97■□□□□ 0.47
HLA-DQB2P05538 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DQB2P05538 HTR7P1-202ENST00000624664 4411 ntBASIC17.97■□□□□ 0.47
HLA-DQB2P05538 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 AC138932.1-201ENST00000534164 6830 ntBASIC17.96■□□□□ 0.47
HLA-DQB2P05538 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 MINOS1P3-201ENST00000457048 203 ntBASIC17.96■□□□□ 0.47
HLA-DQB2P05538 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DQB2P05538 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HLA-DQB2P05538 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 SIRPAP1-201ENST00000448467 1770 ntBASIC17.95■□□□□ 0.46
HLA-DQB2P05538 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DQB2P05538 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms