Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.35■□□□□ 0.37
SIX3O95343 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SIX3O95343 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 LINC01451-201ENST00000623792 534 ntBASIC17.35■□□□□ 0.37
SIX3O95343 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.34■□□□□ 0.37
SIX3O95343 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX3O95343 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX3O95343 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SIX3O95343 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SIX3O95343 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SIX3O95343 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX3O95343 IGHGP-201ENST00000390555 1178 ntBASIC17.34■□□□□ 0.37
SIX3O95343 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SIX3O95343 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.34■□□□□ 0.37
SIX3O95343 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX3O95343 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.34■□□□□ 0.37
SIX3O95343 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 AL359075.1-203ENST00000462729 1002 ntBASIC17.34■□□□□ 0.37
SIX3O95343 AP003733.1-201ENST00000491725 852 ntBASIC17.34■□□□□ 0.37
SIX3O95343 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX3O95343 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX3O95343 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX3O95343 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 AC006011.2-201ENST00000621313 1158 ntBASIC17.34■□□□□ 0.37
SIX3O95343 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX3O95343 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SIX3O95343 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SIX3O95343 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX3O95343 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SIX3O95343 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
SIX3O95343 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.33■□□□□ 0.37
SIX3O95343 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX3O95343 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX3O95343 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX3O95343 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 MIR662-201ENST00000384847 95 ntBASIC17.33■□□□□ 0.36
SIX3O95343 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 TSPY5P-201ENST00000426936 936 ntBASIC17.33■□□□□ 0.36
SIX3O95343 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 VENTXP5-201ENST00000523979 775 ntBASIC17.33■□□□□ 0.36
SIX3O95343 ZNF444P1-201ENST00000559497 298 ntBASIC17.33■□□□□ 0.36
SIX3O95343 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX3O95343 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.33■□□□□ 0.36
SIX3O95343 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SIX3O95343 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX3O95343 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SIX3O95343 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SIX3O95343 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 AL353692.3-201ENST00000407031 1396 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms