Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.86■□□□□ 0.29
PROM1O43490 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.86■□□□□ 0.29
PROM1O43490 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 AL353801.3-201ENST00000609898 542 ntBASIC16.86■□□□□ 0.29
PROM1O43490 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
PROM1O43490 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PROM1O43490 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.86■□□□□ 0.29
PROM1O43490 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
PROM1O43490 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PROM1O43490 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PROM1O43490 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PROM1O43490 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PROM1O43490 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PROM1O43490 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PROM1O43490 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.85■□□□□ 0.29
PROM1O43490 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.85■□□□□ 0.29
PROM1O43490 DDX43P3-201ENST00000441064 443 ntBASIC16.85■□□□□ 0.29
PROM1O43490 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.85■□□□□ 0.29
PROM1O43490 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.85■□□□□ 0.29
PROM1O43490 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PROM1O43490 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.85■□□□□ 0.29
PROM1O43490 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.85■□□□□ 0.29
PROM1O43490 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PROM1O43490 PKD1P1-201ENST00000458669 6805 ntBASIC16.84■□□□□ 0.29
PROM1O43490 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
PROM1O43490 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PROM1O43490 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.84■□□□□ 0.29
PROM1O43490 AL845331.1-201ENST00000424978 1190 ntBASIC16.84■□□□□ 0.29
PROM1O43490 TSSC2-201ENST00000450217 709 ntBASIC16.84■□□□□ 0.29
PROM1O43490 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
PROM1O43490 AC011840.4-201ENST00000578471 627 ntBASIC16.84■□□□□ 0.29
PROM1O43490 AL121894.2-201ENST00000602977 491 ntBASIC16.84■□□□□ 0.29
PROM1O43490 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PROM1O43490 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PROM1O43490 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
PROM1O43490 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PROM1O43490 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PROM1O43490 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
PROM1O43490 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.83■□□□□ 0.28
PROM1O43490 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.83■□□□□ 0.28
PROM1O43490 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.83■□□□□ 0.28
PROM1O43490 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 AC096633.1-201ENST00000422446 749 ntBASIC16.83■□□□□ 0.28
PROM1O43490 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.83■□□□□ 0.28
PROM1O43490 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.83■□□□□ 0.28
PROM1O43490 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PROM1O43490 KRT18P56-201ENST00000507275 550 ntBASIC16.83■□□□□ 0.28
PROM1O43490 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms