Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SDCBPO00560 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SDCBPO00560 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SDCBPO00560 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SDCBPO00560 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.12■□□□□ 0.01
SDCBPO00560 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SDCBPO00560 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SDCBPO00560 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SDCBPO00560 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SDCBPO00560 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.12■□□□□ 0.01
SDCBPO00560 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
SDCBPO00560 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.11■□□□□ 0.01
SDCBPO00560 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 FAM87A-204ENST00000613235 858 ntBASIC15.11■□□□□ 0.01
SDCBPO00560 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.11■□□□□ 0.01
SDCBPO00560 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.11■□□□□ 0.01
SDCBPO00560 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SDCBPO00560 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SDCBPO00560 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SDCBPO00560 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.1■□□□□ 0.01
SDCBPO00560 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.1■□□□□ 0.01
SDCBPO00560 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC15.1■□□□□ 0.01
SDCBPO00560 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
SDCBPO00560 KRT18P22-201ENST00000402024 1347 ntBASIC15.1■□□□□ 0.01
SDCBPO00560 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 AL024508.2-201ENST00000607749 1894 ntBASIC15.1■□□□□ 0.01
SDCBPO00560 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SDCBPO00560 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.1■□□□□ 0.01
SDCBPO00560 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
SDCBPO00560 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 AC133963.1-201ENST00000504166 1679 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms