Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGN4O00479 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGN4O00479 AC005104.2-201ENST00000427818 678 ntBASIC16.5■□□□□ 0.23
HMGN4O00479 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGN4O00479 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGN4O00479 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGN4O00479 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 AC083849.1-201ENST00000615227 514 ntBASIC16.5■□□□□ 0.23
HMGN4O00479 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
HMGN4O00479 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
HMGN4O00479 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HMGN4O00479 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HMGN4O00479 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
HMGN4O00479 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGN4O00479 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGN4O00479 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 AC096633.1-201ENST00000422446 749 ntBASIC16.49■□□□□ 0.23
HMGN4O00479 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 AC063952.2-201ENST00000498792 1227 ntBASIC16.49■□□□□ 0.23
HMGN4O00479 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGN4O00479 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGN4O00479 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGN4O00479 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGN4O00479 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HMGN4O00479 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 AC009053.2-201ENST00000563701 2365 ntBASIC16.49■□□□□ 0.23
HMGN4O00479 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGN4O00479 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGN4O00479 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGN4O00479 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 LYSMD4-203ENST00000378904 2122 ntBASIC16.48■□□□□ 0.23
HMGN4O00479 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HMGN4O00479 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGN4O00479 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGN4O00479 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HMGN4O00479 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGN4O00479 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGN4O00479 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 AC022211.2-201ENST00000585075 2527 ntBASIC16.47■□□□□ 0.23
HMGN4O00479 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HMGN4O00479 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms