Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHGA4Q9Y5G9 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.58■□□□□ 0.41
PCDHGA4Q9Y5G9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
PCDHGA4Q9Y5G9 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 LINC00265-3P-201ENST00000447588 903 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AP000867.3-201ENST00000524675 377 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 TPSP2-201ENST00000561760 610 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AC091304.2-201ENST00000564639 760 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 ADAM3B-201ENST00000569937 840 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AC104692.2-201ENST00000603054 253 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AL136038.4-201ENST00000603606 1261 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AC090164.3-201ENST00000610780 2143 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 AC092850.2-201ENST00000623821 2697 ntBASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHGA4Q9Y5G9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 HTR7P1-202ENST00000624664 4411 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 DRAXINP1-201ENST00000437611 948 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AL160237.2-201ENST00000556165 472 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 LINC01711-201ENST00000598340 967 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AC006538.3-201ENST00000612495 578 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AC004263.2-201ENST00000617183 678 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 AL034417.3-201ENST00000641100 1043 ntBASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PCDHGA4Q9Y5G9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA4Q9Y5G9 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms