Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 LINC00304-203ENST00000565008 1864 ntBASIC14.38□□□□□ -0.11
FOXA2Q9Y261 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 AC112907.2-201ENST00000448639 330 ntBASIC14.38□□□□□ -0.11
FOXA2Q9Y261 KRT18P38-201ENST00000449496 1282 ntBASIC14.38□□□□□ -0.11
FOXA2Q9Y261 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA2Q9Y261 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 HLA-J-201ENST00000462773 1622 ntBASIC14.37□□□□□ -0.11
FOXA2Q9Y261 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 AL671277.2-201ENST00000458060 996 ntBASIC14.37□□□□□ -0.11
FOXA2Q9Y261 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 AC113404.2-201ENST00000507884 177 ntBASIC14.37□□□□□ -0.11
FOXA2Q9Y261 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA2Q9Y261 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 LINC01311-201ENST00000565162 1445 ntBASIC14.36□□□□□ -0.11
FOXA2Q9Y261 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms