Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 DDX43P3-201ENST00000441064 443 ntBASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 REXO1L10P-201ENST00000615707 1290 ntBASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AL359736.2-201ENST00000621992 437 ntBASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 REXO1L12P-201ENST00000622156 912 ntBASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 FAM197Y4-202ENST00000622692 608 ntBASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AC016396.2-201ENST00000562575 1417 ntBASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 PKD1P1-201ENST00000458669 6805 ntBASIC17.29■□□□□ 0.36
CCDC28BQ9BUN5 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 AC009949.1-201ENST00000623048 1830 ntBASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28BQ9BUN5 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms