Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 RN7SL606P-201ENST00000472779 293 ntBASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 AC134043.2-201ENST00000624206 2238 ntBASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 AC104819.1-201ENST00000504587 486 ntBASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 AC116407.2-201ENST00000613639 860 ntBASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4CQ96CF2 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 TSPY12P-201ENST00000421279 868 ntBASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4CQ96CF2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 KRT17P6-201ENST00000453795 1220 ntBASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms