Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.9■□□□□ 0.94
BRF1Q92994 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.89■□□□□ 0.94
BRF1Q92994 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.89■□□□□ 0.94
BRF1Q92994 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
BRF1Q92994 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BRF1Q92994 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
BRF1Q92994 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BRF1Q92994 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
BRF1Q92994 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.89■□□□□ 0.93
BRF1Q92994 AC141586.5-201ENST00000624546 2050 ntBASIC20.89■□□□□ 0.93
BRF1Q92994 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
BRF1Q92994 AC016734.2-201ENST00000624325 1377 ntBASIC20.89■□□□□ 0.93
BRF1Q92994 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.89■□□□□ 0.93
BRF1Q92994 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
BRF1Q92994 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.89■□□□□ 0.93
BRF1Q92994 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 AC090616.6-201ENST00000582640 721 ntBASIC20.89■□□□□ 0.93
BRF1Q92994 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
BRF1Q92994 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
BRF1Q92994 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.89■□□□□ 0.93
BRF1Q92994 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.89■□□□□ 0.93
BRF1Q92994 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.89■□□□□ 0.93
BRF1Q92994 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRF1Q92994 AL645608.8-201ENST00000606034 2086 ntBASIC20.89■□□□□ 0.93
BRF1Q92994 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.88■□□□□ 0.93
BRF1Q92994 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.88■□□□□ 0.93
BRF1Q92994 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.88■□□□□ 0.93
BRF1Q92994 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.88■□□□□ 0.93
BRF1Q92994 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 BX276092.5-203ENST00000456199 560 ntBASIC20.88■□□□□ 0.93
BRF1Q92994 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
BRF1Q92994 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
BRF1Q92994 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.88■□□□□ 0.93
BRF1Q92994 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 HLA-J-201ENST00000462773 1622 ntBASIC20.88■□□□□ 0.93
BRF1Q92994 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 AC010460.3-201ENST00000511359 1579 ntBASIC20.88■□□□□ 0.93
BRF1Q92994 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.88■□□□□ 0.93
BRF1Q92994 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.88■□□□□ 0.93
BRF1Q92994 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRF1Q92994 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.87■□□□□ 0.93
BRF1Q92994 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
BRF1Q92994 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
BRF1Q92994 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.87■□□□□ 0.93
BRF1Q92994 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.87■□□□□ 0.93
BRF1Q92994 AC096633.1-201ENST00000422446 749 ntBASIC20.87■□□□□ 0.93
BRF1Q92994 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.87■□□□□ 0.93
BRF1Q92994 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.87■□□□□ 0.93
BRF1Q92994 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.87■□□□□ 0.93
BRF1Q92994 AL445228.2-201ENST00000605589 952 ntBASIC20.87■□□□□ 0.93
BRF1Q92994 AL121672.3-201ENST00000608644 468 ntBASIC20.87■□□□□ 0.93
BRF1Q92994 AL353801.3-201ENST00000609898 542 ntBASIC20.87■□□□□ 0.93
BRF1Q92994 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.87■□□□□ 0.93
BRF1Q92994 AC106820.2-201ENST00000563775 3264 ntBASIC20.87■□□□□ 0.93
BRF1Q92994 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms