Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 KLF4P1-201ENST00000412782 1185 ntBASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 FAM58CP-201ENST00000435741 640 ntBASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 ACTG1P14-201ENST00000446382 1122 ntBASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AP000344.2-201ENST00000512987 629 ntBASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AC010507.1-201ENST00000633895 436 ntBASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AL805961.1-202ENST00000641562 540 ntBASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SLC44A3Q8N4M1 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 AC003669.1-201ENST00000334569 611 ntBASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 RHOQP3-201ENST00000437982 621 ntBASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 AC074386.1-202ENST00000463561 864 ntBASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 DUTP2-201ENST00000519164 463 ntBASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SLC44A3Q8N4M1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 PTCHD3P3-201ENST00000403073 906 ntBASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC44A3Q8N4M1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 AC025580.3-201ENST00000617932 1424 ntBASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 AC087289.5-201ENST00000586076 3175 ntBASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 AC093010.1-201ENST00000473625 1624 ntBASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 COX20P2-201ENST00000452636 358 ntBASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 AC004449.1-201ENST00000564240 433 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms