Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 RPS2P35-201ENST00000443417 897 ntBASIC11.06□□□□□ -0.64
LINC00643Q86TS7 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AC116351.2-201ENST00000606540 1585 ntBASIC11.06□□□□□ -0.64
LINC00643Q86TS7 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 AL359258.3-201ENST00000622910 2331 ntBASIC11.06□□□□□ -0.64
LINC00643Q86TS7 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
LINC00643Q86TS7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms