Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.18■□□□□ 0.66
KRT39Q6A163 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.18■□□□□ 0.66
KRT39Q6A163 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.18■□□□□ 0.66
KRT39Q6A163 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.18■□□□□ 0.66
KRT39Q6A163 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
KRT39Q6A163 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 HLA-J-201ENST00000462773 1622 ntBASIC19.18■□□□□ 0.66
KRT39Q6A163 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.18■□□□□ 0.66
KRT39Q6A163 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
KRT39Q6A163 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
KRT39Q6A163 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 AC091607.1-201ENST00000490318 1060 ntBASIC19.17■□□□□ 0.66
KRT39Q6A163 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT39Q6A163 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
KRT39Q6A163 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.17■□□□□ 0.66
KRT39Q6A163 NPAP1P7-201ENST00000613027 823 ntBASIC19.17■□□□□ 0.66
KRT39Q6A163 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.17■□□□□ 0.66
KRT39Q6A163 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
KRT39Q6A163 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT39Q6A163 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
KRT39Q6A163 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT39Q6A163 AC233702.3-201ENST00000578656 1387 ntBASIC19.17■□□□□ 0.66
KRT39Q6A163 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT39Q6A163 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT39Q6A163 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
KRT39Q6A163 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
KRT39Q6A163 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT39Q6A163 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 AC026471.1-201ENST00000564629 3026 ntBASIC19.16■□□□□ 0.66
KRT39Q6A163 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
KRT39Q6A163 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
KRT39Q6A163 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
KRT39Q6A163 COX5BP2-201ENST00000392354 334 ntBASIC19.16■□□□□ 0.66
KRT39Q6A163 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 AC007967.3-201ENST00000434308 558 ntBASIC19.16■□□□□ 0.66
KRT39Q6A163 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.16■□□□□ 0.66
KRT39Q6A163 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.16■□□□□ 0.66
KRT39Q6A163 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.16■□□□□ 0.66
KRT39Q6A163 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT39Q6A163 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT39Q6A163 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.16■□□□□ 0.66
KRT39Q6A163 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.16■□□□□ 0.66
KRT39Q6A163 MIR3180-1-201ENST00000580374 94 ntBASIC19.16■□□□□ 0.66
KRT39Q6A163 AP005901.3-202ENST00000581653 237 ntBASIC19.16■□□□□ 0.66
KRT39Q6A163 MIR3180-3-201ENST00000584616 94 ntBASIC19.16■□□□□ 0.66
KRT39Q6A163 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT39Q6A163 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT39Q6A163 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT39Q6A163 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.15■□□□□ 0.66
KRT39Q6A163 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.15■□□□□ 0.66
KRT39Q6A163 ATP5G2P1-201ENST00000433580 426 ntBASIC19.15■□□□□ 0.66
KRT39Q6A163 TOB2P1-201ENST00000469761 992 ntBASIC19.15■□□□□ 0.66
KRT39Q6A163 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.15■□□□□ 0.66
KRT39Q6A163 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.15■□□□□ 0.66
KRT39Q6A163 Z69720.1-201ENST00000601483 472 ntBASIC19.15■□□□□ 0.66
KRT39Q6A163 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms