Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 AC132938.6-201ENST00000623828 1655 ntBASIC20.53■□□□□ 0.88
ERCC3P19447 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
ERCC3P19447 FZD10-202ENST00000539839 3282 ntBASIC20.53■□□□□ 0.88
ERCC3P19447 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 AC090164.3-201ENST00000610780 2143 ntBASIC20.53■□□□□ 0.88
ERCC3P19447 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.52■□□□□ 0.88
ERCC3P19447 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 GMCL1P1-201ENST00000463439 1581 ntBASIC20.52■□□□□ 0.88
ERCC3P19447 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
ERCC3P19447 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.52■□□□□ 0.88
ERCC3P19447 FAM220CP-201ENST00000395253 831 ntBASIC20.52■□□□□ 0.88
ERCC3P19447 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.52■□□□□ 0.88
ERCC3P19447 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.52■□□□□ 0.88
ERCC3P19447 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 AC034105.1-201ENST00000563488 319 ntBASIC20.52■□□□□ 0.88
ERCC3P19447 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.52■□□□□ 0.88
ERCC3P19447 MTDHP4-201ENST00000600287 670 ntBASIC20.52■□□□□ 0.88
ERCC3P19447 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.52■□□□□ 0.88
ERCC3P19447 AC027601.4-201ENST00000611259 610 ntBASIC20.52■□□□□ 0.88
ERCC3P19447 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC3P19447 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.52■□□□□ 0.88
ERCC3P19447 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.52■□□□□ 0.87
ERCC3P19447 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ERCC3P19447 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.52■□□□□ 0.87
ERCC3P19447 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
ERCC3P19447 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC3P19447 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 AC007967.3-201ENST00000434308 558 ntBASIC20.51■□□□□ 0.87
ERCC3P19447 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.51■□□□□ 0.87
ERCC3P19447 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.51■□□□□ 0.87
ERCC3P19447 AC140113.2-201ENST00000604370 208 ntBASIC20.51■□□□□ 0.87
ERCC3P19447 AC008735.5-201ENST00000623544 497 ntBASIC20.51■□□□□ 0.87
ERCC3P19447 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC3P19447 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ERCC3P19447 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.51■□□□□ 0.87
ERCC3P19447 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC3P19447 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ERCC3P19447 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC3P19447 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.5■□□□□ 0.87
ERCC3P19447 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 RNA5SP415-201ENST00000517246 115 ntBASIC20.5■□□□□ 0.87
ERCC3P19447 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.5■□□□□ 0.87
ERCC3P19447 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.5■□□□□ 0.87
ERCC3P19447 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 AL356488.2-201ENST00000602755 427 ntBASIC20.5■□□□□ 0.87
ERCC3P19447 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms