Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 ENSA-206ENST00000361631 725 ntTSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 MYCLP1-201ENST00000372451 1075 ntBASIC23.35■■□□□ 1.33
COL3A1P02461 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
COL3A1P02461 TEX30-205ENST00000376029 959 ntTSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC23.35■■□□□ 1.33
COL3A1P02461 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC23.35■■□□□ 1.33
COL3A1P02461 CIPC-205ENST00000555437 566 ntTSL 3 BASIC23.35■■□□□ 1.33
COL3A1P02461 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
COL3A1P02461 AC116407.3-201ENST00000623905 1129 ntBASIC23.35■■□□□ 1.33
COL3A1P02461 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC23.34■■□□□ 1.33
COL3A1P02461 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC23.34■■□□□ 1.33
COL3A1P02461 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC23.34■■□□□ 1.33
COL3A1P02461 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.34■■□□□ 1.33
COL3A1P02461 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC23.34■■□□□ 1.33
COL3A1P02461 AC079776.4-201ENST00000511039 504 ntBASIC23.34■■□□□ 1.33
COL3A1P02461 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC23.34■■□□□ 1.33
COL3A1P02461 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC23.34■■□□□ 1.33
COL3A1P02461 COPE-211ENST00000600932 1144 ntTSL 5 BASIC23.34■■□□□ 1.33
COL3A1P02461 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL3A1P02461 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL3A1P02461 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC23.33■■□□□ 1.33
COL3A1P02461 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.33■■□□□ 1.33
COL3A1P02461 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC23.33■■□□□ 1.33
COL3A1P02461 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL3A1P02461 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC23.33■■□□□ 1.33
COL3A1P02461 IGHV3-52-201ENST00000519770 353 ntBASIC23.33■■□□□ 1.33
COL3A1P02461 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.33■■□□□ 1.33
COL3A1P02461 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC23.33■■□□□ 1.33
COL3A1P02461 AL139327.4-201ENST00000612362 153 ntBASIC23.33■■□□□ 1.33
COL3A1P02461 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL3A1P02461 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
COL3A1P02461 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL3A1P02461 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL3A1P02461 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL3A1P02461 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL3A1P02461 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL3A1P02461 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL3A1P02461 AC133963.1-201ENST00000504166 1679 ntBASIC23.33■■□□□ 1.32
COL3A1P02461 GNE-204ENST00000539208 2190 ntTSL 2 BASIC23.32■■□□□ 1.32
COL3A1P02461 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
COL3A1P02461 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
COL3A1P02461 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC23.32■■□□□ 1.32
COL3A1P02461 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL3A1P02461 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL3A1P02461 AL590627.1-203ENST00000421194 1026 ntBASIC23.32■■□□□ 1.32
COL3A1P02461 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL3A1P02461 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC23.32■■□□□ 1.32
COL3A1P02461 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL3A1P02461 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.32■■□□□ 1.32
COL3A1P02461 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.32■■□□□ 1.32
COL3A1P02461 CD63-204ENST00000546939 779 ntTSL 3 BASIC23.32■■□□□ 1.32
COL3A1P02461 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC23.32■■□□□ 1.32
COL3A1P02461 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.32■■□□□ 1.32
COL3A1P02461 AL139424.1-201ENST00000607572 797 ntBASIC23.32■■□□□ 1.32
COL3A1P02461 AL589182.2-201ENST00000619332 1049 ntBASIC23.32■■□□□ 1.32
COL3A1P02461 AC004706.3-202ENST00000621574 984 ntBASIC23.32■■□□□ 1.32
COL3A1P02461 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL3A1P02461 LYSMD4-203ENST00000378904 2122 ntBASIC23.32■■□□□ 1.32
COL3A1P02461 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL3A1P02461 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL3A1P02461 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC23.31■■□□□ 1.32
COL3A1P02461 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC23.31■■□□□ 1.32
COL3A1P02461 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC23.31■■□□□ 1.32
COL3A1P02461 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.31■■□□□ 1.32
COL3A1P02461 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC23.31■■□□□ 1.32
COL3A1P02461 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC23.31■■□□□ 1.32
COL3A1P02461 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC23.31■■□□□ 1.32
COL3A1P02461 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
COL3A1P02461 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
COL3A1P02461 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
COL3A1P02461 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC23.31■■□□□ 1.32
COL3A1P02461 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL3A1P02461 AC046185.3-201ENST00000623228 1824 ntBASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms