Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX3O95343 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX3O95343 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
SIX3O95343 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX3O95343 KRT18P57-201ENST00000443599 1254 ntBASIC17.37■□□□□ 0.37
SIX3O95343 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX3O95343 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX3O95343 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX3O95343 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
SIX3O95343 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX3O95343 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX3O95343 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX3O95343 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX3O95343 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
SIX3O95343 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SIX3O95343 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX3O95343 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX3O95343 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX3O95343 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX3O95343 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX3O95343 AC099398.1-201ENST00000567919 2776 ntBASIC17.36■□□□□ 0.37
SIX3O95343 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX3O95343 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX3O95343 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX3O95343 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX3O95343 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 TSPY12P-201ENST00000421279 868 ntBASIC17.36■□□□□ 0.37
SIX3O95343 DDX43P3-201ENST00000441064 443 ntBASIC17.36■□□□□ 0.37
SIX3O95343 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
SIX3O95343 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX3O95343 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
SIX3O95343 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
SIX3O95343 AC009154.2-201ENST00000621177 724 ntBASIC17.36■□□□□ 0.37
SIX3O95343 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SIX3O95343 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
SIX3O95343 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX3O95343 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX3O95343 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SIX3O95343 FAM8A6P-201ENST00000407496 1135 ntBASIC17.35■□□□□ 0.37
SIX3O95343 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX3O95343 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX3O95343 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX3O95343 AC112698.1-201ENST00000510299 916 ntBASIC17.35■□□□□ 0.37
SIX3O95343 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SIX3O95343 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms