Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGN4O00479 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGN4O00479 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGN4O00479 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 AL390719.2-201ENST00000606993 987 ntBASIC16.53■□□□□ 0.24
HMGN4O00479 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 BX276092.7-203ENST00000637198 1536 ntBASIC16.53■□□□□ 0.24
HMGN4O00479 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGN4O00479 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGN4O00479 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGN4O00479 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 LINC01311-201ENST00000565162 1445 ntBASIC16.53■□□□□ 0.24
HMGN4O00479 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGN4O00479 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.53■□□□□ 0.24
HMGN4O00479 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGN4O00479 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
HMGN4O00479 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGN4O00479 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGN4O00479 SPDYE13P-201ENST00000445314 798 ntBASIC16.52■□□□□ 0.24
HMGN4O00479 AC104076.2-201ENST00000448912 469 ntBASIC16.52■□□□□ 0.24
HMGN4O00479 AC092647.4-201ENST00000457211 535 ntBASIC16.52■□□□□ 0.24
HMGN4O00479 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGN4O00479 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGN4O00479 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGN4O00479 RNF126P1-202ENST00000569893 925 ntBASIC16.52■□□□□ 0.24
HMGN4O00479 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGN4O00479 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HMGN4O00479 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGN4O00479 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
HMGN4O00479 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HMGN4O00479 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HMGN4O00479 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGN4O00479 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HMGN4O00479 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HMGN4O00479 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.51■□□□□ 0.23
HMGN4O00479 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 PCDHA12-202ENST00000613593 2588 ntBASIC16.51■□□□□ 0.23
HMGN4O00479 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGN4O00479 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGN4O00479 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGN4O00479 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HMGN4O00479 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
HMGN4O00479 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGN4O00479 Z83836.1-201ENST00000624605 1642 ntBASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms