Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 KRT18P27-201ENST00000427733 1299 ntBASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 TERC-201ENST00000602385 541 ntBASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 Z83851.2-201ENST00000609564 659 ntBASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PAAF1Q9BRP4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.89■□□□□ 0.62
PAAF1Q9BRP4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PAAF1Q9BRP4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
PAAF1Q9BRP4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 AC073621.1-201ENST00000392730 636 ntBASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 PGAM5P1-201ENST00000518923 814 ntBASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 AC140113.2-201ENST00000604370 208 ntBASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 GPALPP1-207ENST00000611650 899 ntBASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PAAF1Q9BRP4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 AL020989.1-201ENST00000422979 469 ntBASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 AL356488.2-201ENST00000602755 427 ntBASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 PMS2P7-201ENST00000506558 1336 ntBASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PAAF1Q9BRP4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
PAAF1Q9BRP4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms