Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.42■□□□□ 0.54
CDX2Q99626 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
CDX2Q99626 SPTLC1P1-201ENST00000447199 261 ntBASIC18.42■□□□□ 0.54
CDX2Q99626 ACA64.2-201ENST00000459014 129 ntBASIC18.42■□□□□ 0.54
CDX2Q99626 IGHV3-62-201ENST00000520057 340 ntBASIC18.42■□□□□ 0.54
CDX2Q99626 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 TP53TG3HP-202ENST00000569755 579 ntBASIC18.42■□□□□ 0.54
CDX2Q99626 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.42■□□□□ 0.54
CDX2Q99626 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CDX2Q99626 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.41■□□□□ 0.54
CDX2Q99626 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDX2Q99626 AC138969.3-201ENST00000546612 1459 ntBASIC18.41■□□□□ 0.54
CDX2Q99626 AC138932.2-201ENST00000548268 1459 ntBASIC18.41■□□□□ 0.54
CDX2Q99626 AC126755.4-201ENST00000549796 1459 ntBASIC18.41■□□□□ 0.54
CDX2Q99626 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CDX2Q99626 UXT-AS1-201ENST00000590504 1525 ntBASIC18.41■□□□□ 0.54
CDX2Q99626 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
CDX2Q99626 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CDX2Q99626 RARRES2P8-201ENST00000566335 367 ntBASIC18.41■□□□□ 0.54
CDX2Q99626 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 AKAP8P1-201ENST00000434743 1349 ntBASIC18.41■□□□□ 0.54
CDX2Q99626 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.41■□□□□ 0.54
CDX2Q99626 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX2Q99626 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CDX2Q99626 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX2Q99626 AC112907.3-201ENST00000577781 2400 ntBASIC18.4■□□□□ 0.54
CDX2Q99626 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX2Q99626 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.4■□□□□ 0.54
CDX2Q99626 MIR658-201ENST00000385210 100 ntBASIC18.4■□□□□ 0.54
CDX2Q99626 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.4■□□□□ 0.54
CDX2Q99626 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
CDX2Q99626 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.4■□□□□ 0.54
CDX2Q99626 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.4■□□□□ 0.54
CDX2Q99626 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX2Q99626 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.4■□□□□ 0.54
CDX2Q99626 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX2Q99626 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CDX2Q99626 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX2Q99626 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.4■□□□□ 0.54
CDX2Q99626 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX2Q99626 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX2Q99626 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX2Q99626 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX2Q99626 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.39■□□□□ 0.54
CDX2Q99626 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
CDX2Q99626 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDX2Q99626 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.39■□□□□ 0.53
CDX2Q99626 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
CDX2Q99626 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CDX2Q99626 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.39■□□□□ 0.53
CDX2Q99626 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.39■□□□□ 0.53
CDX2Q99626 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.39■□□□□ 0.53
CDX2Q99626 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.39■□□□□ 0.53
CDX2Q99626 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.39■□□□□ 0.53
CDX2Q99626 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.39■□□□□ 0.53
CDX2Q99626 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 AL162274.1-201ENST00000617191 1098 ntBASIC18.39■□□□□ 0.53
CDX2Q99626 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.39■□□□□ 0.53
CDX2Q99626 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 AC018445.3-201ENST00000624177 1945 ntBASIC18.39■□□□□ 0.53
CDX2Q99626 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX2Q99626 AL133338.1-201ENST00000565695 1517 ntBASIC18.39■□□□□ 0.53
CDX2Q99626 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.38■□□□□ 0.53
CDX2Q99626 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX2Q99626 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDX2Q99626 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
CDX2Q99626 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CDX2Q99626 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDX2Q99626 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
CDX2Q99626 AC079776.1-201ENST00000401540 1152 ntBASIC18.38■□□□□ 0.53
CDX2Q99626 AC004945.1-201ENST00000416738 983 ntBASIC18.38■□□□□ 0.53
CDX2Q99626 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms