Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.34■□□□□ 0.85
USP28Q96RU2 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.34■□□□□ 0.85
USP28Q96RU2 HYMAI.1-201ENST00000620949 238 ntBASIC20.34■□□□□ 0.85
USP28Q96RU2 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.34■□□□□ 0.85
USP28Q96RU2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
USP28Q96RU2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP28Q96RU2 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP28Q96RU2 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.34■□□□□ 0.85
USP28Q96RU2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.34■□□□□ 0.85
USP28Q96RU2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP28Q96RU2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.34■□□□□ 0.85
USP28Q96RU2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP28Q96RU2 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.34■□□□□ 0.85
USP28Q96RU2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP28Q96RU2 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
USP28Q96RU2 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.33■□□□□ 0.85
USP28Q96RU2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.33■□□□□ 0.85
USP28Q96RU2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.33■□□□□ 0.85
USP28Q96RU2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.33■□□□□ 0.85
USP28Q96RU2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.33■□□□□ 0.85
USP28Q96RU2 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.33■□□□□ 0.85
USP28Q96RU2 AP003733.1-201ENST00000491725 852 ntBASIC20.33■□□□□ 0.85
USP28Q96RU2 VENTXP5-201ENST00000523979 775 ntBASIC20.33■□□□□ 0.85
USP28Q96RU2 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP28Q96RU2 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
USP28Q96RU2 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
USP28Q96RU2 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
USP28Q96RU2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP28Q96RU2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP28Q96RU2 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP28Q96RU2 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP28Q96RU2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP28Q96RU2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP28Q96RU2 AL353692.3-201ENST00000407031 1396 ntBASIC20.33■□□□□ 0.84
USP28Q96RU2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
USP28Q96RU2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
USP28Q96RU2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
USP28Q96RU2 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
USP28Q96RU2 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
USP28Q96RU2 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.32■□□□□ 0.84
USP28Q96RU2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
USP28Q96RU2 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
USP28Q96RU2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 FAM8A6P-201ENST00000407496 1135 ntBASIC20.32■□□□□ 0.84
USP28Q96RU2 TSPY5P-201ENST00000426936 936 ntBASIC20.32■□□□□ 0.84
USP28Q96RU2 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.32■□□□□ 0.84
USP28Q96RU2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.32■□□□□ 0.84
USP28Q96RU2 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.32■□□□□ 0.84
USP28Q96RU2 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.32■□□□□ 0.84
USP28Q96RU2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.32■□□□□ 0.84
USP28Q96RU2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
USP28Q96RU2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
USP28Q96RU2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
USP28Q96RU2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP28Q96RU2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.32■□□□□ 0.84
USP28Q96RU2 AD000864.1-201ENST00000624076 2295 ntBASIC20.32■□□□□ 0.84
USP28Q96RU2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
USP28Q96RU2 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.31■□□□□ 0.84
USP28Q96RU2 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.31■□□□□ 0.84
USP28Q96RU2 AL359075.1-203ENST00000462729 1002 ntBASIC20.31■□□□□ 0.84
USP28Q96RU2 AC068472.1-201ENST00000474589 881 ntBASIC20.31■□□□□ 0.84
USP28Q96RU2 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.31■□□□□ 0.84
USP28Q96RU2 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.31■□□□□ 0.84
USP28Q96RU2 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.31■□□□□ 0.84
USP28Q96RU2 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 AC090340.1-201ENST00000620778 4980 ntBASIC20.31■□□□□ 0.84
USP28Q96RU2 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms