Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 RN7SL692P-201ENST00000464677 288 ntBASIC17.45■□□□□ 0.38
VPS13AQ96RL7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC116407.2-201ENST00000613639 860 ntBASIC17.45■□□□□ 0.38
VPS13AQ96RL7 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 RPS2P32-201ENST00000439199 892 ntBASIC17.44■□□□□ 0.38
VPS13AQ96RL7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 REXO1L3P-201ENST00000622202 1288 ntBASIC17.44■□□□□ 0.38
VPS13AQ96RL7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
VPS13AQ96RL7 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.44■□□□□ 0.38
VPS13AQ96RL7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AC125807.1-201ENST00000483097 614 ntBASIC17.43■□□□□ 0.38
VPS13AQ96RL7 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AC018445.3-201ENST00000624177 1945 ntBASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AL161938.1-201ENST00000569833 2180 ntBASIC17.43■□□□□ 0.38
VPS13AQ96RL7 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 COX5BP8-201ENST00000416911 349 ntBASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AC107890.1-201ENST00000422478 521 ntBASIC17.43■□□□□ 0.38
VPS13AQ96RL7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13AQ96RL7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 KLF4P1-201ENST00000412782 1185 ntBASIC17.42■□□□□ 0.38
VPS13AQ96RL7 KRT18P32-201ENST00000424695 1287 ntBASIC17.42■□□□□ 0.38
VPS13AQ96RL7 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms