Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS35Q96QK1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS35Q96QK1 DDX43P3-201ENST00000441064 443 ntBASIC17.67■□□□□ 0.42
VPS35Q96QK1 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 MINOS1P3-201ENST00000457048 203 ntBASIC17.67■□□□□ 0.42
VPS35Q96QK1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS35Q96QK1 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS35Q96QK1 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS35Q96QK1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS35Q96QK1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 NOC2LP1-202ENST00000452600 2235 ntBASIC17.66■□□□□ 0.42
VPS35Q96QK1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 POM121L3P-201ENST00000419331 1163 ntBASIC17.66■□□□□ 0.42
VPS35Q96QK1 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 BNIP3P18-201ENST00000593976 575 ntBASIC17.66■□□□□ 0.42
VPS35Q96QK1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.66■□□□□ 0.42
VPS35Q96QK1 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS35Q96QK1 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS35Q96QK1 AC018470.1-201ENST00000624790 3129 ntBASIC17.65■□□□□ 0.42
VPS35Q96QK1 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 AC099336.1-202ENST00000602961 463 ntBASIC17.65■□□□□ 0.42
VPS35Q96QK1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 AC020916.1-201ENST00000587762 1774 ntBASIC17.65■□□□□ 0.42
VPS35Q96QK1 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms