Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 AL499627.1-201ENST00000569373 2188 ntBASIC17.08■□□□□ 0.32
VMP1Q96GC9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VMP1Q96GC9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 MIR662-201ENST00000384847 95 ntBASIC17.07■□□□□ 0.32
VMP1Q96GC9 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VMP1Q96GC9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.07■□□□□ 0.32
VMP1Q96GC9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.06■□□□□ 0.32
VMP1Q96GC9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VMP1Q96GC9 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 UPK3BP1-201ENST00000428678 509 ntBASIC17.05■□□□□ 0.32
VMP1Q96GC9 KRT18P48-201ENST00000434763 852 ntBASIC17.05■□□□□ 0.32
VMP1Q96GC9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 AC024563.2-201ENST00000603282 481 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms