Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
CDH4P55283 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 FAAHP1-202ENST00000446499 1238 ntBASIC18.17■□□□□ 0.5
CDH4P55283 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH4P55283 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.17■□□□□ 0.5
CDH4P55283 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.17■□□□□ 0.5
CDH4P55283 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH4P55283 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CDH4P55283 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.17■□□□□ 0.5
CDH4P55283 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH4P55283 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDH4P55283 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
CDH4P55283 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH4P55283 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDH4P55283 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 ABCD1P5-201ENST00000445663 754 ntBASIC18.16■□□□□ 0.5
CDH4P55283 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH4P55283 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH4P55283 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH4P55283 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH4P55283 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDH4P55283 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH4P55283 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH4P55283 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CDH4P55283 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH4P55283 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH4P55283 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH4P55283 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.15■□□□□ 0.5
CDH4P55283 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 AC106795.1-205ENST00000512851 1056 ntBASIC18.15■□□□□ 0.5
CDH4P55283 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.15■□□□□ 0.5
CDH4P55283 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH4P55283 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.15■□□□□ 0.5
CDH4P55283 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDH4P55283 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH4P55283 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH4P55283 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH4P55283 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CDH4P55283 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.14■□□□□ 0.5
CDH4P55283 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CDH4P55283 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
CDH4P55283 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CDH4P55283 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
CDH4P55283 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH4P55283 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CDH4P55283 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH4P55283 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CDH4P55283 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH4P55283 RBM17P3-201ENST00000417687 1192 ntBASIC18.14■□□□□ 0.49
CDH4P55283 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms