Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.05■□□□□ 0.64
VCPP55072 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.05■□□□□ 0.64
VCPP55072 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.05■□□□□ 0.64
VCPP55072 MIR7706-201ENST00000613747 67 ntBASIC19.05■□□□□ 0.64
VCPP55072 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.05■□□□□ 0.64
VCPP55072 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
VCPP55072 ZNF259P1-201ENST00000407656 1365 ntBASIC19.05■□□□□ 0.64
VCPP55072 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.05■□□□□ 0.64
VCPP55072 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VCPP55072 REXO1L9P-201ENST00000604264 2108 ntBASIC19.04■□□□□ 0.64
VCPP55072 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VCPP55072 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
VCPP55072 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VCPP55072 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
VCPP55072 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.04■□□□□ 0.64
VCPP55072 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.04■□□□□ 0.64
VCPP55072 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VCPP55072 RPS8P6-201ENST00000426177 609 ntBASIC19.04■□□□□ 0.64
VCPP55072 PGAM5P1-201ENST00000518923 814 ntBASIC19.04■□□□□ 0.64
VCPP55072 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VCPP55072 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.04■□□□□ 0.64
VCPP55072 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VCPP55072 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.04■□□□□ 0.64
VCPP55072 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VCPP55072 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VCPP55072 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.03■□□□□ 0.64
VCPP55072 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VCPP55072 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.03■□□□□ 0.64
VCPP55072 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
VCPP55072 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.03■□□□□ 0.64
VCPP55072 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.03■□□□□ 0.64
VCPP55072 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.03■□□□□ 0.64
VCPP55072 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.03■□□□□ 0.64
VCPP55072 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
VCPP55072 AC010327.4-202ENST00000591484 748 ntBASIC19.03■□□□□ 0.64
VCPP55072 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
VCPP55072 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
VCPP55072 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.03■□□□□ 0.64
VCPP55072 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.03■□□□□ 0.64
VCPP55072 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.03■□□□□ 0.64
VCPP55072 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VCPP55072 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCPP55072 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.02■□□□□ 0.64
VCPP55072 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 UPF3AP3-201ENST00000420996 769 ntBASIC19.02■□□□□ 0.64
VCPP55072 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 AP003733.1-201ENST00000491725 852 ntBASIC19.02■□□□□ 0.64
VCPP55072 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.02■□□□□ 0.64
VCPP55072 AC139887.3-201ENST00000568585 713 ntBASIC19.02■□□□□ 0.64
VCPP55072 AP005901.3-202ENST00000581653 237 ntBASIC19.02■□□□□ 0.64
VCPP55072 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.02■□□□□ 0.64
VCPP55072 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms