Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.51■□□□□ 0.87
CTCFP49711 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.51■□□□□ 0.87
CTCFP49711 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CTCFP49711 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.51■□□□□ 0.87
CTCFP49711 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.51■□□□□ 0.87
CTCFP49711 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CTCFP49711 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CTCFP49711 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.5■□□□□ 0.87
CTCFP49711 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
CTCFP49711 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.5■□□□□ 0.87
CTCFP49711 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.5■□□□□ 0.87
CTCFP49711 AC107890.1-201ENST00000422478 521 ntBASIC20.5■□□□□ 0.87
CTCFP49711 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.5■□□□□ 0.87
CTCFP49711 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.5■□□□□ 0.87
CTCFP49711 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC20.5■□□□□ 0.87
CTCFP49711 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.5■□□□□ 0.87
CTCFP49711 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CTCFP49711 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.5■□□□□ 0.87
CTCFP49711 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTCFP49711 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.49■□□□□ 0.87
CTCFP49711 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.49■□□□□ 0.87
CTCFP49711 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC20.49■□□□□ 0.87
CTCFP49711 SPDYE21P-201ENST00000413323 827 ntBASIC20.49■□□□□ 0.87
CTCFP49711 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.49■□□□□ 0.87
CTCFP49711 U91328.1-201ENST00000437528 223 ntBASIC20.49■□□□□ 0.87
CTCFP49711 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.49■□□□□ 0.87
CTCFP49711 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.49■□□□□ 0.87
CTCFP49711 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CTCFP49711 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.49■□□□□ 0.87
CTCFP49711 AC068137.2-201ENST00000605408 478 ntBASIC20.49■□□□□ 0.87
CTCFP49711 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.49■□□□□ 0.87
CTCFP49711 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTCFP49711 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
CTCFP49711 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CTCFP49711 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CTCFP49711 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CTCFP49711 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.48■□□□□ 0.87
CTCFP49711 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.48■□□□□ 0.87
CTCFP49711 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.48■□□□□ 0.87
CTCFP49711 PIN1P1-201ENST00000412108 996 ntBASIC20.48■□□□□ 0.87
CTCFP49711 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.48■□□□□ 0.87
CTCFP49711 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.48■□□□□ 0.87
CTCFP49711 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.48■□□□□ 0.87
CTCFP49711 AL512356.2-201ENST00000546955 174 ntBASIC20.48■□□□□ 0.87
CTCFP49711 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.48■□□□□ 0.87
CTCFP49711 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.48■□□□□ 0.87
CTCFP49711 AL390754.1-201ENST00000619088 582 ntBASIC20.48■□□□□ 0.87
CTCFP49711 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CTCFP49711 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CTCFP49711 Z98044.1-201ENST00000632503 1764 ntBASIC20.48■□□□□ 0.87
CTCFP49711 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.48■□□□□ 0.87
CTCFP49711 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CTCFP49711 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CTCFP49711 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CTCFP49711 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.48■□□□□ 0.87
CTCFP49711 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms