Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CDX1P47902 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 FER1L4-210ENST00000615531 5998 ntBASIC14.57□□□□□ -0.08
CDX1P47902 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.56□□□□□ -0.08
CDX1P47902 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.56□□□□□ -0.08
CDX1P47902 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.56□□□□□ -0.08
CDX1P47902 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 AL023973.1-201ENST00000624619 620 ntBASIC14.56□□□□□ -0.08
CDX1P47902 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.56□□□□□ -0.08
CDX1P47902 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 MED25-212ENST00000618715 1467 ntTSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CDX1P47902 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
CDX1P47902 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CDX1P47902 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 AL109659.2-201ENST00000606809 1674 ntBASIC14.55□□□□□ -0.08
CDX1P47902 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.55□□□□□ -0.08
CDX1P47902 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.55□□□□□ -0.08
CDX1P47902 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 AL441883.1-201ENST00000566170 1045 ntBASIC14.55□□□□□ -0.08
CDX1P47902 AC087388.1-201ENST00000571370 1112 ntBASIC14.55□□□□□ -0.08
CDX1P47902 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CDX1P47902 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CDX1P47902 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CDX1P47902 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.54□□□□□ -0.08
CDX1P47902 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms