Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC21.46■■□□□ 1.03
BRCA1P38398 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.03
BRCA1P38398 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.45■■□□□ 1.02
BRCA1P38398 LINC00982-205ENST00000420957 435 ntBASIC21.45■■□□□ 1.02
BRCA1P38398 SPDYE14P-201ENST00000442619 822 ntBASIC21.45■■□□□ 1.02
BRCA1P38398 RN7SL589P-201ENST00000481268 310 ntBASIC21.45■■□□□ 1.02
BRCA1P38398 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.45■■□□□ 1.02
BRCA1P38398 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.45■■□□□ 1.02
BRCA1P38398 AC010336.2-201ENST00000564226 506 ntBASIC21.45■■□□□ 1.02
BRCA1P38398 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.45■■□□□ 1.02
BRCA1P38398 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21.45■■□□□ 1.02
BRCA1P38398 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.45■■□□□ 1.02
BRCA1P38398 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.45■■□□□ 1.02
BRCA1P38398 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.45■■□□□ 1.02
BRCA1P38398 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.45■■□□□ 1.02
BRCA1P38398 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
BRCA1P38398 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
BRCA1P38398 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.45■■□□□ 1.02
BRCA1P38398 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.45■■□□□ 1.02
BRCA1P38398 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.45■■□□□ 1.02
BRCA1P38398 AC079140.1-201ENST00000508039 487 ntBASIC21.45■■□□□ 1.02
BRCA1P38398 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
BRCA1P38398 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BRCA1P38398 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BRCA1P38398 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BRCA1P38398 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.44■■□□□ 1.02
BRCA1P38398 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.44■■□□□ 1.02
BRCA1P38398 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BRCA1P38398 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.44■■□□□ 1.02
BRCA1P38398 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BRCA1P38398 INGX-202ENST00000489074 768 ntBASIC21.44■■□□□ 1.02
BRCA1P38398 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.44■■□□□ 1.02
BRCA1P38398 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.44■■□□□ 1.02
BRCA1P38398 AL606495.2-201ENST00000605867 535 ntBASIC21.44■■□□□ 1.02
BRCA1P38398 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
BRCA1P38398 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.44■■□□□ 1.02
BRCA1P38398 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.44■■□□□ 1.02
BRCA1P38398 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
BRCA1P38398 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.44■■□□□ 1.02
BRCA1P38398 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.44■■□□□ 1.02
BRCA1P38398 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BRCA1P38398 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.44■■□□□ 1.02
BRCA1P38398 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BRCA1P38398 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.43■■□□□ 1.02
BRCA1P38398 MIR943-201ENST00000401286 94 ntBASIC21.43■■□□□ 1.02
BRCA1P38398 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.43■■□□□ 1.02
BRCA1P38398 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.43■■□□□ 1.02
BRCA1P38398 AC069120.2-201ENST00000524091 540 ntBASIC21.43■■□□□ 1.02
BRCA1P38398 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
BRCA1P38398 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
BRCA1P38398 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.43■■□□□ 1.02
BRCA1P38398 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.43■■□□□ 1.02
BRCA1P38398 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC21.43■■□□□ 1.02
BRCA1P38398 AL592309.1-201ENST00000443127 649 ntBASIC21.43■■□□□ 1.02
BRCA1P38398 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.43■■□□□ 1.02
BRCA1P38398 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.43■■□□□ 1.02
BRCA1P38398 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.43■■□□□ 1.02
BRCA1P38398 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.43■■□□□ 1.02
BRCA1P38398 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BRCA1P38398 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.42■■□□□ 1.02
BRCA1P38398 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.42■■□□□ 1.02
BRCA1P38398 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.42■■□□□ 1.02
BRCA1P38398 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.42■■□□□ 1.02
BRCA1P38398 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.42■■□□□ 1.02
BRCA1P38398 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.42■■□□□ 1.02
BRCA1P38398 AC243562.1-201ENST00000560672 389 ntBASIC21.42■■□□□ 1.02
BRCA1P38398 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BRCA1P38398 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms