Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HOXD13P35453 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 TP73-AS1-210ENST00000637775 1455 ntBASIC19.4■□□□□ 0.7
HOXD13P35453 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXD13P35453 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXD13P35453 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXD13P35453 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXD13P35453 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXD13P35453 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
HOXD13P35453 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
HOXD13P35453 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
HOXD13P35453 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXD13P35453 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 AP000867.3-201ENST00000524675 377 ntBASIC19.39■□□□□ 0.69
HOXD13P35453 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 AC011467.2-201ENST00000598425 242 ntBASIC19.39■□□□□ 0.69
HOXD13P35453 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXD13P35453 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 AL049757.1-201ENST00000616842 1596 ntBASIC19.39■□□□□ 0.69
HOXD13P35453 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD13P35453 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXD13P35453 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
HOXD13P35453 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
HOXD13P35453 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXD13P35453 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HOXD13P35453 AC122714.2-201ENST00000502787 707 ntBASIC19.38■□□□□ 0.69
HOXD13P35453 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXD13P35453 AC108860.2-201ENST00000562760 2183 ntBASIC19.38■□□□□ 0.69
HOXD13P35453 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
HOXD13P35453 AC074051.2-201ENST00000565115 352 ntBASIC19.38■□□□□ 0.69
HOXD13P35453 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXD13P35453 Z69720.1-201ENST00000601483 472 ntBASIC19.38■□□□□ 0.69
HOXD13P35453 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.38■□□□□ 0.69
HOXD13P35453 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXD13P35453 AL138688.1-201ENST00000624851 1594 ntBASIC19.38■□□□□ 0.69
HOXD13P35453 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXD13P35453 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD13P35453 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXD13P35453 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXD13P35453 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
HOXD13P35453 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXD13P35453 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXD13P35453 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXD13P35453 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXD13P35453 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 RCN1P2-201ENST00000398357 915 ntBASIC19.37■□□□□ 0.69
HOXD13P35453 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 VENTXP7-201ENST00000475503 772 ntBASIC19.37■□□□□ 0.69
HOXD13P35453 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXD13P35453 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.37■□□□□ 0.69
HOXD13P35453 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXD13P35453 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 LYSMD4-203ENST00000378904 2122 ntBASIC19.37■□□□□ 0.69
HOXD13P35453 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD13P35453 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
HOXD13P35453 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXD13P35453 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXD13P35453 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXD13P35453 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms