Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN4P29074 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN4P29074 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PTPN4P29074 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PTPN4P29074 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PTPN4P29074 AL096828.2-201ENST00000567259 1965 ntBASIC17.9■□□□□ 0.46
PTPN4P29074 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.89■□□□□ 0.46
PTPN4P29074 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PTPN4P29074 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
PTPN4P29074 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.89■□□□□ 0.45
PTPN4P29074 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.89■□□□□ 0.45
PTPN4P29074 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PTPN4P29074 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.89■□□□□ 0.45
PTPN4P29074 FAM86EP-206ENST00000510506 987 ntBASIC17.89■□□□□ 0.45
PTPN4P29074 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.89■□□□□ 0.45
PTPN4P29074 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN4P29074 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
PTPN4P29074 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN4P29074 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.89■□□□□ 0.45
PTPN4P29074 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 PKD1P1-201ENST00000458669 6805 ntBASIC17.88■□□□□ 0.45
PTPN4P29074 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 PCED1CP-201ENST00000419887 785 ntBASIC17.88■□□□□ 0.45
PTPN4P29074 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.88■□□□□ 0.45
PTPN4P29074 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
PTPN4P29074 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 NEK4P2-201ENST00000580004 1012 ntBASIC17.88■□□□□ 0.45
PTPN4P29074 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
PTPN4P29074 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.88■□□□□ 0.45
PTPN4P29074 AL357033.4-201ENST00000617703 1807 ntBASIC17.88■□□□□ 0.45
PTPN4P29074 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN4P29074 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 KRT8P32-201ENST00000512863 1461 ntBASIC17.88■□□□□ 0.45
PTPN4P29074 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN4P29074 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.87■□□□□ 0.45
PTPN4P29074 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN4P29074 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN4P29074 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN4P29074 AC009947.2-201ENST00000444014 672 ntBASIC17.87■□□□□ 0.45
PTPN4P29074 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN4P29074 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN4P29074 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.87■□□□□ 0.45
PTPN4P29074 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms