Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 MIR1233-2-201ENST00000408138 82 ntBASIC20.56■□□□□ 0.88
ERCC3P19447 MIR1233-1-201ENST00000408722 82 ntBASIC20.56■□□□□ 0.88
ERCC3P19447 BX842568.4-201ENST00000421222 227 ntBASIC20.56■□□□□ 0.88
ERCC3P19447 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
ERCC3P19447 AC092910.1-201ENST00000482027 1129 ntBASIC20.56■□□□□ 0.88
ERCC3P19447 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
ERCC3P19447 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.56■□□□□ 0.88
ERCC3P19447 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.56■□□□□ 0.88
ERCC3P19447 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.56■□□□□ 0.88
ERCC3P19447 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
ERCC3P19447 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
ERCC3P19447 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.55■□□□□ 0.88
ERCC3P19447 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.55■□□□□ 0.88
ERCC3P19447 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.55■□□□□ 0.88
ERCC3P19447 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.55■□□□□ 0.88
ERCC3P19447 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 NKAPP1-205ENST00000585790 367 ntBASIC20.55■□□□□ 0.88
ERCC3P19447 AL139288.1-201ENST00000623748 933 ntBASIC20.55■□□□□ 0.88
ERCC3P19447 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.55■□□□□ 0.88
ERCC3P19447 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.55■□□□□ 0.88
ERCC3P19447 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
ERCC3P19447 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
ERCC3P19447 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ERCC3P19447 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.54■□□□□ 0.88
ERCC3P19447 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 AC098831.1-202ENST00000438821 336 ntBASIC20.54■□□□□ 0.88
ERCC3P19447 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.54■□□□□ 0.88
ERCC3P19447 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.54■□□□□ 0.88
ERCC3P19447 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
ERCC3P19447 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.54■□□□□ 0.88
ERCC3P19447 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC3P19447 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC3P19447 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 PGAM5P1-201ENST00000518923 814 ntBASIC20.53■□□□□ 0.88
ERCC3P19447 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.53■□□□□ 0.88
ERCC3P19447 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.53■□□□□ 0.88
ERCC3P19447 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.53■□□□□ 0.88
ERCC3P19447 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC3P19447 AP000867.4-201ENST00000641616 219 ntBASIC20.53■□□□□ 0.88
ERCC3P19447 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC3P19447 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms