Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC129492.6-201ENST00000611383 1305 ntBASIC18.26■□□□□ 0.51
VCANP13611 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.26■□□□□ 0.51
VCANP13611 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
VCANP13611 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.26■□□□□ 0.51
VCANP13611 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.26■□□□□ 0.51
VCANP13611 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.26■□□□□ 0.51
VCANP13611 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.26■□□□□ 0.51
VCANP13611 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 NCF1C-201ENST00000438382 1427 ntBASIC18.26■□□□□ 0.51
VCANP13611 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
VCANP13611 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 AC132938.5-201ENST00000624980 1813 ntBASIC18.26■□□□□ 0.51
VCANP13611 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.25■□□□□ 0.51
VCANP13611 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.25■□□□□ 0.51
VCANP13611 AC132938.2-201ENST00000579188 680 ntBASIC18.25■□□□□ 0.51
VCANP13611 AC099568.2-201ENST00000609194 695 ntBASIC18.25■□□□□ 0.51
VCANP13611 AL591163.1-201ENST00000641757 987 ntBASIC18.25■□□□□ 0.51
VCANP13611 MTMR9LP-203ENST00000426597 1545 ntBASIC18.25■□□□□ 0.51
VCANP13611 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
VCANP13611 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
VCANP13611 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.25■□□□□ 0.51
VCANP13611 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.25■□□□□ 0.51
VCANP13611 AC020907.5-201ENST00000624372 1936 ntBASIC18.25■□□□□ 0.51
VCANP13611 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.25■□□□□ 0.51
VCANP13611 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.25■□□□□ 0.51
VCANP13611 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.25■□□□□ 0.51
VCANP13611 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.25■□□□□ 0.51
VCANP13611 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VCANP13611 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCANP13611 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.25■□□□□ 0.51
VCANP13611 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.24■□□□□ 0.51
VCANP13611 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
VCANP13611 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
VCANP13611 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VCANP13611 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.24■□□□□ 0.51
VCANP13611 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.24■□□□□ 0.51
VCANP13611 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.24■□□□□ 0.51
VCANP13611 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VCANP13611 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
VCANP13611 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.24■□□□□ 0.51
VCANP13611 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.24■□□□□ 0.51
VCANP13611 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VCANP13611 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCANP13611 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.24■□□□□ 0.51
VCANP13611 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.23■□□□□ 0.51
VCANP13611 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.23■□□□□ 0.51
VCANP13611 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
VCANP13611 AL355306.1-201ENST00000415580 579 ntBASIC18.23■□□□□ 0.51
VCANP13611 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
VCANP13611 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.23■□□□□ 0.51
VCANP13611 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VCANP13611 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.23■□□□□ 0.51
VCANP13611 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 KRT18P32-201ENST00000424695 1287 ntBASIC18.23■□□□□ 0.51
VCANP13611 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.23■□□□□ 0.51
VCANP13611 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.23■□□□□ 0.51
VCANP13611 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 AL139099.5-201ENST00000635274 300 ntBASIC18.23■□□□□ 0.51
VCANP13611 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCANP13611 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 MIR4259-201ENST00000584466 101 ntBASIC18.22■□□□□ 0.51
VCANP13611 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCANP13611 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.22■□□□□ 0.51
VCANP13611 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms