Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGB1P09429 AC246785.2-201ENST00000432512 513 ntBASIC20.98■□□□□ 0.95
HMGB1P09429 AC011840.4-201ENST00000578471 627 ntBASIC20.98■□□□□ 0.95
HMGB1P09429 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HMGB1P09429 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGB1P09429 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
HMGB1P09429 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HMGB1P09429 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
HMGB1P09429 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGB1P09429 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HMGB1P09429 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
HMGB1P09429 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 COX5BP2-201ENST00000392354 334 ntBASIC20.97■□□□□ 0.95
HMGB1P09429 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 CHCHD2P8-201ENST00000429873 447 ntBASIC20.97■□□□□ 0.95
HMGB1P09429 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.97■□□□□ 0.95
HMGB1P09429 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGB1P09429 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.97■□□□□ 0.95
HMGB1P09429 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HMGB1P09429 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGB1P09429 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HMGB1P09429 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
HMGB1P09429 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB1P09429 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGB1P09429 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGB1P09429 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 PCED1CP-201ENST00000419887 785 ntBASIC20.96■□□□□ 0.95
HMGB1P09429 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGB1P09429 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB1P09429 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGB1P09429 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGB1P09429 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
HMGB1P09429 AC125634.1-201ENST00000438758 1403 ntBASIC20.95■□□□□ 0.95
HMGB1P09429 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HMGB1P09429 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGB1P09429 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 AL845331.1-201ENST00000424978 1190 ntBASIC20.95■□□□□ 0.94
HMGB1P09429 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGB1P09429 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGB1P09429 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 AC016734.2-201ENST00000624325 1377 ntBASIC20.95■□□□□ 0.94
HMGB1P09429 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
HMGB1P09429 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
HMGB1P09429 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.95■□□□□ 0.94
HMGB1P09429 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB1P09429 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HMGB1P09429 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms