Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD4O95243 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.21■□□□□ 0.99
MBD4O95243 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD4O95243 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD4O95243 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
MBD4O95243 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD4O95243 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD4O95243 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.2■□□□□ 0.99
MBD4O95243 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.2■□□□□ 0.98
MBD4O95243 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
MBD4O95243 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
MBD4O95243 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
MBD4O95243 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.2■□□□□ 0.98
MBD4O95243 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
MBD4O95243 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.2■□□□□ 0.98
MBD4O95243 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.2■□□□□ 0.98
MBD4O95243 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.2■□□□□ 0.98
MBD4O95243 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
MBD4O95243 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MBD4O95243 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.19■□□□□ 0.98
MBD4O95243 MRPL3P1-201ENST00000400109 1033 ntBASIC21.19■□□□□ 0.98
MBD4O95243 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 FDX1P1-201ENST00000449115 551 ntBASIC21.19■□□□□ 0.98
MBD4O95243 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
MBD4O95243 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MBD4O95243 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.19■□□□□ 0.98
MBD4O95243 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.19■□□□□ 0.98
MBD4O95243 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.19■□□□□ 0.98
MBD4O95243 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.19■□□□□ 0.98
MBD4O95243 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 AP000867.4-201ENST00000641616 219 ntBASIC21.19■□□□□ 0.98
MBD4O95243 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.19■□□□□ 0.98
MBD4O95243 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD4O95243 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.19■□□□□ 0.98
MBD4O95243 BX276092.7-203ENST00000637198 1536 ntBASIC21.19■□□□□ 0.98
MBD4O95243 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MBD4O95243 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.18■□□□□ 0.98
MBD4O95243 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.18■□□□□ 0.98
MBD4O95243 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.18■□□□□ 0.98
MBD4O95243 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.18■□□□□ 0.98
MBD4O95243 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.18■□□□□ 0.98
MBD4O95243 AC019129.2-201ENST00000609837 1235 ntBASIC21.18■□□□□ 0.98
MBD4O95243 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.18■□□□□ 0.98
MBD4O95243 AD001527.2-201ENST00000622994 785 ntBASIC21.18■□□□□ 0.98
MBD4O95243 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MBD4O95243 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.18■□□□□ 0.98
MBD4O95243 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.18■□□□□ 0.98
MBD4O95243 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.18■□□□□ 0.98
MBD4O95243 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.18■□□□□ 0.98
MBD4O95243 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MBD4O95243 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
MBD4O95243 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
MBD4O95243 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
MBD4O95243 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.17■□□□□ 0.98
MBD4O95243 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.17■□□□□ 0.98
MBD4O95243 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MBD4O95243 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms