Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC22.27■■□□□ 1.16
CACNA1FO60840 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CACNA1FO60840 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
CACNA1FO60840 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.27■■□□□ 1.15
CACNA1FO60840 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC22.27■■□□□ 1.15
CACNA1FO60840 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC22.27■■□□□ 1.15
CACNA1FO60840 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.15
CACNA1FO60840 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
CACNA1FO60840 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.15
CACNA1FO60840 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
CACNA1FO60840 AC025062.2-201ENST00000605477 670 ntBASIC22.27■■□□□ 1.15
CACNA1FO60840 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.15
CACNA1FO60840 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC22.26■■□□□ 1.15
CACNA1FO60840 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC22.26■■□□□ 1.15
CACNA1FO60840 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC22.26■■□□□ 1.15
CACNA1FO60840 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CACNA1FO60840 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 AC073621.1-201ENST00000392730 636 ntBASIC22.26■■□□□ 1.15
CACNA1FO60840 RPS2P1-201ENST00000434010 821 ntBASIC22.26■■□□□ 1.15
CACNA1FO60840 NKTR-203ENST00000442970 646 ntTSL 2 BASIC22.26■■□□□ 1.15
CACNA1FO60840 CALM3-211ENST00000598871 561 ntTSL 4 BASIC22.26■■□□□ 1.15
CACNA1FO60840 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC22.26■■□□□ 1.15
CACNA1FO60840 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC22.26■■□□□ 1.15
CACNA1FO60840 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1FO60840 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CACNA1FO60840 S100A2-206ENST00000497140 697 ntTSL 2 BASIC22.25■■□□□ 1.15
CACNA1FO60840 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1FO60840 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC22.25■■□□□ 1.15
CACNA1FO60840 KLK8-205ENST00000593490 267 ntTSL 3 BASIC22.25■■□□□ 1.15
CACNA1FO60840 AL590787.1-201ENST00000568856 1315 ntBASIC22.25■■□□□ 1.15
CACNA1FO60840 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1FO60840 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1FO60840 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC22.25■■□□□ 1.15
CACNA1FO60840 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
CACNA1FO60840 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1FO60840 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22.25■■□□□ 1.15
CACNA1FO60840 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
CACNA1FO60840 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1FO60840 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
CACNA1FO60840 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC22.25■■□□□ 1.15
CACNA1FO60840 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC22.25■■□□□ 1.15
CACNA1FO60840 SDCCAG3P1-201ENST00000589292 1150 ntBASIC22.25■■□□□ 1.15
CACNA1FO60840 TK1-204ENST00000590430 683 ntTSL 3 BASIC22.25■■□□□ 1.15
CACNA1FO60840 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1FO60840 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
CACNA1FO60840 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC22.24■■□□□ 1.15
CACNA1FO60840 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CACNA1FO60840 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 AC064862.7-201ENST00000604520 867 ntBASIC22.24■■□□□ 1.15
CACNA1FO60840 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
CACNA1FO60840 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CACNA1FO60840 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1FO60840 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
CACNA1FO60840 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 ARTN-206ENST00000472435 402 ntTSL 3 BASIC22.23■■□□□ 1.15
CACNA1FO60840 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC22.23■■□□□ 1.15
CACNA1FO60840 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC22.23■■□□□ 1.15
CACNA1FO60840 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
CACNA1FO60840 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 NABP1-203ENST00000409510 843 ntTSL 5 BASIC22.23■■□□□ 1.15
CACNA1FO60840 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC22.23■■□□□ 1.15
CACNA1FO60840 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms