Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 AL163051.1-201ENST00000569214 1512 ntBASIC13.04□□□□□ -0.32
SMKR1H3BMG3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 CKBP1-201ENST00000565489 1086 ntBASIC13.04□□□□□ -0.32
SMKR1H3BMG3 AL445675.2-201ENST00000620291 557 ntBASIC13.04□□□□□ -0.32
SMKR1H3BMG3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 TSPY26P-202ENST00000565928 3884 ntBASIC13.04□□□□□ -0.32
SMKR1H3BMG3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 MIR149-201ENST00000384879 89 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AL023284.2-201ENST00000405850 579 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AC004951.3-201ENST00000418645 1148 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 GUSBP6-202ENST00000438529 1198 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 MCCD1P1-208ENST00000445732 328 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AC006970.2-201ENST00000450065 779 ntBASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
SMKR1H3BMG3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms