Protein–RNA interactions for Protein: Q9HBL6

LRTM1, Leucine-rich repeat and transmembrane domain-containing protein 1, humanhuman

Predictions only

Length 345 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1Q9HBL6 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LRTM1Q9HBL6 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LRTM1Q9HBL6 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
LRTM1Q9HBL6 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LRTM1Q9HBL6 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
LRTM1Q9HBL6 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LRTM1Q9HBL6 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRTM1Q9HBL6 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRTM1Q9HBL6 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.55■■□□□ 1.36
LRTM1Q9HBL6 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
LRTM1Q9HBL6 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 MIR219A2-201ENST00000608502 1504 ntBASIC23.54■■□□□ 1.36
LRTM1Q9HBL6 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
LRTM1Q9HBL6 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
LRTM1Q9HBL6 AC148477.6-201ENST00000623746 465 ntBASIC23.53■■□□□ 1.36
LRTM1Q9HBL6 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 ZNRF2P2-203ENST00000454624 420 ntBASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LRTM1Q9HBL6 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 AC020928.2-201ENST00000588717 2197 ntBASIC23.51■■□□□ 1.35
LRTM1Q9HBL6 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRTM1Q9HBL6 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRTM1Q9HBL6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRTM1Q9HBL6 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRTM1Q9HBL6 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
LRTM1Q9HBL6 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LRTM1Q9HBL6 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
LRTM1Q9HBL6 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LRTM1Q9HBL6 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.48■■□□□ 1.35
LRTM1Q9HBL6 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LRTM1Q9HBL6 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRTM1Q9HBL6 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRTM1Q9HBL6 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.46■■□□□ 1.35
LRTM1Q9HBL6 HLA-V-202ENST00000446817 847 ntBASIC23.46■■□□□ 1.35
LRTM1Q9HBL6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRTM1Q9HBL6 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
LRTM1Q9HBL6 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.45■■□□□ 1.34
LRTM1Q9HBL6 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.45■■□□□ 1.34
LRTM1Q9HBL6 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
LRTM1Q9HBL6 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.45■■□□□ 1.34
LRTM1Q9HBL6 AC135731.1-201ENST00000569415 2548 ntBASIC23.45■■□□□ 1.34
LRTM1Q9HBL6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
LRTM1Q9HBL6 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRTM1Q9HBL6 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRTM1Q9HBL6 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.43■■□□□ 1.34
LRTM1Q9HBL6 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.43■■□□□ 1.34
LRTM1Q9HBL6 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.43■■□□□ 1.34
LRTM1Q9HBL6 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
LRTM1Q9HBL6 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRTM1Q9HBL6 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRTM1Q9HBL6 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms