Protein–RNA interactions for Protein: Q9H5U6

ZCCHC4, Zinc finger CCHC domain-containing protein 4, humanhuman

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC4Q9H5U6 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZCCHC4Q9H5U6 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.03
ZCCHC4Q9H5U6 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.45■■□□□ 1.02
ZCCHC4Q9H5U6 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
ZCCHC4Q9H5U6 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZCCHC4Q9H5U6 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZCCHC4Q9H5U6 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZCCHC4Q9H5U6 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZCCHC4Q9H5U6 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ZCCHC4Q9H5U6 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ZCCHC4Q9H5U6 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ZCCHC4Q9H5U6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ZCCHC4Q9H5U6 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.42■■□□□ 1.02
ZCCHC4Q9H5U6 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
ZCCHC4Q9H5U6 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZCCHC4Q9H5U6 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZCCHC4Q9H5U6 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZCCHC4Q9H5U6 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ZCCHC4Q9H5U6 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZCCHC4Q9H5U6 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.39■■□□□ 1.02
ZCCHC4Q9H5U6 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
ZCCHC4Q9H5U6 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.39■■□□□ 1.02
ZCCHC4Q9H5U6 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZCCHC4Q9H5U6 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZCCHC4Q9H5U6 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 AC021231.2-201ENST00000594613 730 ntBASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZCCHC4Q9H5U6 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 AC142381.3-201ENST00000568208 1670 ntBASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 WHAMMP3-201ENST00000611636 1609 ntBASIC21.37■■□□□ 1.01
ZCCHC4Q9H5U6 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.36■■□□□ 1.01
ZCCHC4Q9H5U6 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 DUX4L29-201ENST00000425409 679 ntBASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.35■■□□□ 1.01
ZCCHC4Q9H5U6 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZCCHC4Q9H5U6 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
ZCCHC4Q9H5U6 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZCCHC4Q9H5U6 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZCCHC4Q9H5U6 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
ZCCHC4Q9H5U6 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZCCHC4Q9H5U6 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
ZCCHC4Q9H5U6 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.33■■□□□ 1.01
ZCCHC4Q9H5U6 AC010501.1-201ENST00000606270 1962 ntBASIC21.33■■□□□ 1.01
ZCCHC4Q9H5U6 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.33■■□□□ 1
ZCCHC4Q9H5U6 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ZCCHC4Q9H5U6 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
ZCCHC4Q9H5U6 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.33■■□□□ 1
ZCCHC4Q9H5U6 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
ZCCHC4Q9H5U6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.32■■□□□ 1
ZCCHC4Q9H5U6 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZCCHC4Q9H5U6 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZCCHC4Q9H5U6 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZCCHC4Q9H5U6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
ZCCHC4Q9H5U6 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZCCHC4Q9H5U6 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 142.5 ms