Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 AC008813.1-201ENST00000536597 885 ntBASIC14.41□□□□□ -0.1
LIMD2Q9BT23 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC14.41□□□□□ -0.1
LIMD2Q9BT23 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC14.41□□□□□ -0.1
LIMD2Q9BT23 CHML-204ENST00000638121 920 ntTSL 2 BASIC14.41□□□□□ -0.1
LIMD2Q9BT23 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIMD2Q9BT23 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIMD2Q9BT23 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 AGPS-202ENST00000409888 815 ntTSL 4 BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 RPS2-210ENST00000530225 765 ntTSL 2 BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIMD2Q9BT23 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 PEX7-203ENST00000541292 945 ntTSL 5 BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 CHST11-202ENST00000546689 756 ntTSL 2 BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L13-201ENST00000554103 1267 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L15-201ENST00000611059 1267 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L23-201ENST00000615195 1269 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L24-201ENST00000617576 1269 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L22-201ENST00000618238 1269 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L20-201ENST00000619712 1269 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L21-201ENST00000622058 1269 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L10-201ENST00000622460 1267 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DUX4L25-201ENST00000624915 1269 ntBASIC14.38□□□□□ -0.11
LIMD2Q9BT23 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIMD2Q9BT23 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMD2Q9BT23 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 AL121749.1-202ENST00000609313 2153 ntBASIC14.36□□□□□ -0.11
LIMD2Q9BT23 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 DUX4L11-201ENST00000611504 1267 ntBASIC14.36□□□□□ -0.11
LIMD2Q9BT23 DUX4L12-201ENST00000614593 1267 ntBASIC14.36□□□□□ -0.11
LIMD2Q9BT23 DUX4L14-201ENST00000621227 1267 ntBASIC14.36□□□□□ -0.11
LIMD2Q9BT23 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIMD2Q9BT23 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMD2Q9BT23 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMD2Q9BT23 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMD2Q9BT23 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMD2Q9BT23 ZNRF2P2-203ENST00000454624 420 ntBASIC14.34□□□□□ -0.11
LIMD2Q9BT23 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMD2Q9BT23 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC14.33□□□□□ -0.11
LIMD2Q9BT23 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIMD2Q9BT23 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
LIMD2Q9BT23 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIMD2Q9BT23 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMD2Q9BT23 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC14.32□□□□□ -0.12
LIMD2Q9BT23 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIMD2Q9BT23 RNF166-209ENST00000567844 633 ntTSL 5 BASIC14.31□□□□□ -0.12
LIMD2Q9BT23 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms