Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD3Q96EY7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD3Q96EY7 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.29■■□□□ 1.48
PTCD3Q96EY7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD3Q96EY7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD3Q96EY7 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCD3Q96EY7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PTCD3Q96EY7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCD3Q96EY7 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PTCD3Q96EY7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTCD3Q96EY7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.27■■□□□ 1.48
PTCD3Q96EY7 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTCD3Q96EY7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCD3Q96EY7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
PTCD3Q96EY7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.26■■□□□ 1.47
PTCD3Q96EY7 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCD3Q96EY7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCD3Q96EY7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCD3Q96EY7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
PTCD3Q96EY7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.25■■□□□ 1.47
PTCD3Q96EY7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 ABHD17AP4-201ENST00000411545 909 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L13-201ENST00000554103 1267 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L15-201ENST00000611059 1267 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L11-201ENST00000611504 1267 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L12-201ENST00000614593 1267 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L23-201ENST00000615195 1269 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L24-201ENST00000617576 1269 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L22-201ENST00000618238 1269 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L20-201ENST00000619712 1269 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L14-201ENST00000621227 1267 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L21-201ENST00000622058 1269 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L10-201ENST00000622460 1267 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 DUX4L25-201ENST00000624915 1269 ntBASIC24.25■■□□□ 1.47
PTCD3Q96EY7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PTCD3Q96EY7 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PTCD3Q96EY7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.24■■□□□ 1.47
PTCD3Q96EY7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
PTCD3Q96EY7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCD3Q96EY7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PTCD3Q96EY7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PTCD3Q96EY7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCD3Q96EY7 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCD3Q96EY7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCD3Q96EY7 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PTCD3Q96EY7 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
PTCD3Q96EY7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
PTCD3Q96EY7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.22■■□□□ 1.47
PTCD3Q96EY7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PTCD3Q96EY7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.21■■□□□ 1.47
PTCD3Q96EY7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.47
PTCD3Q96EY7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
PTCD3Q96EY7 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PTCD3Q96EY7 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PTCD3Q96EY7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.2■■□□□ 1.46
PTCD3Q96EY7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PTCD3Q96EY7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
PTCD3Q96EY7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PTCD3Q96EY7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PTCD3Q96EY7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PTCD3Q96EY7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.19■■□□□ 1.46
PTCD3Q96EY7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
PTCD3Q96EY7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
PTCD3Q96EY7 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
PTCD3Q96EY7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PTCD3Q96EY7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PTCD3Q96EY7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.17■■□□□ 1.46
PTCD3Q96EY7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
PTCD3Q96EY7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.16■■□□□ 1.46
PTCD3Q96EY7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.16■■□□□ 1.46
PTCD3Q96EY7 ERN1-208ENST00000606895 2068 ntBASIC24.15■■□□□ 1.46
PTCD3Q96EY7 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCD3Q96EY7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCD3Q96EY7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.15■■□□□ 1.46
PTCD3Q96EY7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
PTCD3Q96EY7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCD3Q96EY7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PTCD3Q96EY7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
PTCD3Q96EY7 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PTCD3Q96EY7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.14■■□□□ 1.45
PTCD3Q96EY7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.14■■□□□ 1.45
PTCD3Q96EY7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
PTCD3Q96EY7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.14■■□□□ 1.45
PTCD3Q96EY7 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
PTCD3Q96EY7 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCD3Q96EY7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 231.1 ms