Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CXCL12P48061 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC24.92■■□□□ 1.58
CXCL12P48061 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.92■■□□□ 1.58
CXCL12P48061 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
CXCL12P48061 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
CXCL12P48061 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CXCL12P48061 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC24.91■■□□□ 1.58
CXCL12P48061 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CXCL12P48061 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.9■■□□□ 1.58
CXCL12P48061 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.9■■□□□ 1.58
CXCL12P48061 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
CXCL12P48061 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC24.9■■□□□ 1.58
CXCL12P48061 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.9■■□□□ 1.58
CXCL12P48061 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CXCL12P48061 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CXCL12P48061 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CXCL12P48061 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.89■■□□□ 1.58
CXCL12P48061 AC239859.2-201ENST00000444165 318 ntBASIC24.89■■□□□ 1.58
CXCL12P48061 AC019171.1-201ENST00000601251 1056 ntBASIC24.89■■□□□ 1.58
CXCL12P48061 AL359504.2-201ENST00000605506 1601 ntBASIC24.89■■□□□ 1.57
CXCL12P48061 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
CXCL12P48061 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.88■■□□□ 1.57
CXCL12P48061 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CXCL12P48061 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CXCL12P48061 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.87■■□□□ 1.57
CXCL12P48061 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.87■■□□□ 1.57
CXCL12P48061 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
CXCL12P48061 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CXCL12P48061 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CXCL12P48061 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC24.87■■□□□ 1.57
CXCL12P48061 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.87■■□□□ 1.57
CXCL12P48061 AP002414.2-202ENST00000590929 1450 ntBASIC24.87■■□□□ 1.57
CXCL12P48061 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CXCL12P48061 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
CXCL12P48061 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
CXCL12P48061 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
CXCL12P48061 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CXCL12P48061 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CXCL12P48061 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.86■■□□□ 1.57
CXCL12P48061 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CXCL12P48061 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.85■■□□□ 1.57
CXCL12P48061 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.84■■□□□ 1.57
CXCL12P48061 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC24.84■■□□□ 1.57
CXCL12P48061 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.84■■□□□ 1.57
CXCL12P48061 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
CXCL12P48061 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC24.84■■□□□ 1.57
CXCL12P48061 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CXCL12P48061 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.83■■□□□ 1.57
CXCL12P48061 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.83■■□□□ 1.57
CXCL12P48061 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CXCL12P48061 ABCB10P3-201ENST00000561950 2166 ntBASIC24.83■■□□□ 1.56
CXCL12P48061 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
CXCL12P48061 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CXCL12P48061 Z92544.1-202ENST00000571933 1220 ntBASIC24.82■■□□□ 1.56
CXCL12P48061 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC24.82■■□□□ 1.56
CXCL12P48061 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CXCL12P48061 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
CXCL12P48061 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.81■■□□□ 1.56
CXCL12P48061 AC087393.1-201ENST00000582896 145 ntBASIC24.81■■□□□ 1.56
CXCL12P48061 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CXCL12P48061 AC008406.3-201ENST00000620001 1374 ntBASIC24.8■■□□□ 1.56
CXCL12P48061 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CXCL12P48061 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CXCL12P48061 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.8■■□□□ 1.56
CXCL12P48061 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CXCL12P48061 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
CXCL12P48061 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CXCL12P48061 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.79■■□□□ 1.56
CXCL12P48061 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24.78■■□□□ 1.56
CXCL12P48061 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.78■■□□□ 1.56
CXCL12P48061 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
CXCL12P48061 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CXCL12P48061 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
CXCL12P48061 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.77■■□□□ 1.56
CXCL12P48061 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.77■■□□□ 1.56
CXCL12P48061 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
CXCL12P48061 MIR935-201ENST00000401179 91 ntBASIC24.76■■□□□ 1.55
CXCL12P48061 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CXCL12P48061 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CXCL12P48061 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.75■■□□□ 1.55
CXCL12P48061 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CXCL12P48061 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CXCL12P48061 AL139393.2-201ENST00000608721 2025 ntBASIC24.75■■□□□ 1.55
CXCL12P48061 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CXCL12P48061 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
CXCL12P48061 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
CXCL12P48061 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
CXCL12P48061 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CXCL12P48061 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.74■■□□□ 1.55
CXCL12P48061 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.74■■□□□ 1.55
CXCL12P48061 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CXCL12P48061 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CXCL12P48061 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CXCL12P48061 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
CXCL12P48061 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC24.73■■□□□ 1.55
CXCL12P48061 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.73■■□□□ 1.55
CXCL12P48061 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.73■■□□□ 1.55
CXCL12P48061 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CXCL12P48061 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CXCL12P48061 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.72■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms