Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YDL144CYDL144C 1071 nt7.23□□□□□ -1.25
SHP1P34223 ATP10YLR393W 840 nt7.23□□□□□ -1.25
SHP1P34223 HVG1YER039C 750 nt7.21□□□□□ -1.26
SHP1P34223 MOG1YJR074W 657 nt7.21□□□□□ -1.26
SHP1P34223 YDL177CYDL177C 513 nt7.2□□□□□ -1.26
SHP1P34223 GGC1YDL198C 903 nt7.2□□□□□ -1.26
SHP1P34223 IRC7YFR055W 1023 nt7.2□□□□□ -1.26
SHP1P34223 SCS7YMR272C 1155 nt7.2□□□□□ -1.26
SHP1P34223 CEM1YER061C 1329 nt7.2□□□□□ -1.26
SHP1P34223 TUF1YOR187W 1314 nt7.2□□□□□ -1.26
SHP1P34223 PTC3YBL056W 1407 nt7.19□□□□□ -1.26
SHP1P34223 CTF3YLR381W 2202 nt7.19□□□□□ -1.26
SHP1P34223 SRL2YLR082C 1179 nt7.19□□□□□ -1.26
SHP1P34223 FPR3YML074C 1236 nt7.19□□□□□ -1.26
SHP1P34223 PAC2YER007W 1557 nt7.19□□□□□ -1.26
SHP1P34223 COX10YPL172C 1389 nt7.19□□□□□ -1.26
SHP1P34223 PMA2YPL036W 2844 nt7.19□□□□□ -1.26
SHP1P34223 MIP1YOR330C 3765 nt7.18□□□□□ -1.26
SHP1P34223 STT3YGL022W 2157 nt7.18□□□□□ -1.26
SHP1P34223 ARE2YNR019W 1929 nt7.17□□□□□ -1.26
SHP1P34223 GNP1YDR508C 1992 nt7.17□□□□□ -1.26
SHP1P34223 PPM2YOL141W 2088 nt7.17□□□□□ -1.26
SHP1P34223 EMP65YER140W 1671 nt7.17□□□□□ -1.26
SHP1P34223 PTC4YBR125C 1182 nt7.17□□□□□ -1.26
SHP1P34223 PEX3YDR329C 1326 nt7.17□□□□□ -1.26
SHP1P34223 IVY1YDR229W 1362 nt7.17□□□□□ -1.26
SHP1P34223 YGR054WYGR054W 1929 nt7.16□□□□□ -1.26
SHP1P34223 SDH4YDR178W 546 nt7.15□□□□□ -1.26
SHP1P34223 PRB1YEL060C 1908 nt7.15□□□□□ -1.27
SHP1P34223 FAL1YDR021W 1200 nt7.14□□□□□ -1.27
SHP1P34223 GPA2YER020W 1350 nt7.14□□□□□ -1.27
SHP1P34223 ERG1YGR175C 1491 nt7.14□□□□□ -1.27
SHP1P34223 LYS1YIR034C 1122 nt7.14□□□□□ -1.27
SHP1P34223 PRC1YMR297W 1599 nt7.14□□□□□ -1.27
SHP1P34223 GLC8YMR311C 690 nt7.14□□□□□ -1.27
SHP1P34223 SLA2YNL243W 2907 nt7.14□□□□□ -1.27
SHP1P34223 IRC11YOR013W 471 nt7.14□□□□□ -1.27
SHP1P34223 RVB2YPL235W 1416 nt7.13□□□□□ -1.27
SHP1P34223 PSR2YLR019W 1194 nt7.13□□□□□ -1.27
SHP1P34223 GTO3YMR251W 1101 nt7.13□□□□□ -1.27
SHP1P34223 RFC4YOL094C 972 nt7.13□□□□□ -1.27
SHP1P34223 MRPL28YDR462W 444 nt7.12□□□□□ -1.27
SHP1P34223 AIM34YMR003W 597 nt7.12□□□□□ -1.27
SHP1P34223 YPL257WYPL257W 582 nt7.12□□□□□ -1.27
SHP1P34223 SNT309YPR101W 528 nt7.12□□□□□ -1.27
SHP1P34223 AMN1YBR158W 1650 nt7.12□□□□□ -1.27
SHP1P34223 CCR4YAL021C 2514 nt7.11□□□□□ -1.27
SHP1P34223 DFR1YOR236W 636 nt7.11□□□□□ -1.27
SHP1P34223 YPL102CYPL102C 303 nt7.11□□□□□ -1.27
SHP1P34223 TOD6YBL054W 1578 nt7.11□□□□□ -1.27
SHP1P34223 YLL066CYLL066C 3618 nt7.1□□□□□ -1.27
SHP1P34223 YLL067CYLL067C 3618 nt7.1□□□□□ -1.27
SHP1P34223 CHA1YCL064C 1083 nt7.1□□□□□ -1.27
SHP1P34223 YJR146WYJR146W 354 nt7.1□□□□□ -1.27
SHP1P34223 SEN34YAR008W 828 nt7.1□□□□□ -1.27
SHP1P34223 TSR3YOR006C 942 nt7.1□□□□□ -1.27
SHP1P34223 YCR041WYCR041W 333 nt7.09□□□□□ -1.27
SHP1P34223 HEM2YGL040C 1029 nt7.09□□□□□ -1.27
SHP1P34223 DOT5YIL010W 648 nt7.09□□□□□ -1.27
SHP1P34223 YLR112WYLR112W 420 nt7.09□□□□□ -1.27
SHP1P34223 RGD2YFL047W 2145 nt7.09□□□□□ -1.28
SHP1P34223 YHR213W-AYHR213W-A 234 nt7.08□□□□□ -1.28
SHP1P34223 tG(GCC)BtG(GCC)B 71 nt7.07□□□□□ -1.28
SHP1P34223 SUF16tG(GCC)C 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)D1tG(GCC)D1 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)D2tG(GCC)D2 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)EtG(GCC)E 71 nt7.07□□□□□ -1.28
SHP1P34223 SUF20tG(GCC)F1 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)F2tG(GCC)F2 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)G1tG(GCC)G1 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)G2tG(GCC)G2 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)J1tG(GCC)J1 71 nt7.07□□□□□ -1.28
SHP1P34223 SUF23tG(GCC)J2 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)MtG(GCC)M 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)O1tG(GCC)O1 71 nt7.07□□□□□ -1.28
SHP1P34223 SUF17tG(GCC)O2 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)P1tG(GCC)P1 71 nt7.07□□□□□ -1.28
SHP1P34223 tG(GCC)P2tG(GCC)P2 71 nt7.07□□□□□ -1.28
SHP1P34223 SNF4YGL115W 969 nt7.07□□□□□ -1.28
SHP1P34223 SNN1YNL086W 309 nt7.07□□□□□ -1.28
SHP1P34223 TIM22YDL217C 624 nt7.06□□□□□ -1.28
SHP1P34223 ATG36YJL185C 882 nt7.06□□□□□ -1.28
SHP1P34223 SPE4YLR146C 903 nt7.06□□□□□ -1.28
SHP1P34223 YPL041CYPL041C 624 nt7.06□□□□□ -1.28
SHP1P34223 YIL108WYIL108W 2091 nt7.05□□□□□ -1.28
SHP1P34223 ITR1YDR497C 1755 nt7.05□□□□□ -1.28
SHP1P34223 RAD59YDL059C 717 nt7.05□□□□□ -1.28
SHP1P34223 YFL013W-AYFL013W-A 804 nt7.05□□□□□ -1.28
SHP1P34223 TIF2YJL138C 1188 nt7.05□□□□□ -1.28
SHP1P34223 TIF1YKR059W 1188 nt7.05□□□□□ -1.28
SHP1P34223 OGG1YML060W 1131 nt7.05□□□□□ -1.28
SHP1P34223 RUF23RUF23 254 nt7.05□□□□□ -1.28
SHP1P34223 ECM19YLR390W 339 nt7.04□□□□□ -1.28
SHP1P34223 SIT4YDL047W 936 nt7.03□□□□□ -1.28
SHP1P34223 MDE1YJR024C 735 nt7.03□□□□□ -1.28
SHP1P34223 YNL285WYNL285W 372 nt7.03□□□□□ -1.28
SHP1P34223 YOR012WYOR012W 414 nt7.03□□□□□ -1.28
SHP1P34223 OPI11YPR044C 354 nt7.03□□□□□ -1.28
SHP1P34223 YDL218WYDL218W 954 nt7.02□□□□□ -1.29
SHP1P34223 BUD32YGR262C 786 nt7.02□□□□□ -1.29
Retrieved 100 of 7,029 protein–RNA pairs in 33 ms