Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
COL4A5P29400 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL4A5P29400 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.25■■■□□ 2.43
COL4A5P29400 AL031848.2-201ENST00000607670 837 ntBASIC30.23■■■□□ 2.43
COL4A5P29400 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC30.23■■■□□ 2.43
COL4A5P29400 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.22■■■□□ 2.43
COL4A5P29400 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.22■■■□□ 2.43
COL4A5P29400 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.22■■■□□ 2.43
COL4A5P29400 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL4A5P29400 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL4A5P29400 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A5P29400 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A5P29400 AC018755.3-202ENST00000596210 929 ntBASIC30.2■■■□□ 2.43
COL4A5P29400 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.2■■■□□ 2.42
COL4A5P29400 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
COL4A5P29400 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.2■■■□□ 2.42
COL4A5P29400 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC30.2■■■□□ 2.42
COL4A5P29400 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.19■■■□□ 2.42
COL4A5P29400 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL4A5P29400 AL359504.2-201ENST00000605506 1601 ntBASIC30.18■■■□□ 2.42
COL4A5P29400 ABCB10P3-201ENST00000561950 2166 ntBASIC30.18■■■□□ 2.42
COL4A5P29400 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
COL4A5P29400 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL4A5P29400 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL4A5P29400 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.17■■■□□ 2.42
COL4A5P29400 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL4A5P29400 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL4A5P29400 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.15■■■□□ 2.42
COL4A5P29400 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL4A5P29400 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL4A5P29400 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.14■■■□□ 2.42
COL4A5P29400 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL4A5P29400 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.14■■■□□ 2.41
COL4A5P29400 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL4A5P29400 AP002414.2-202ENST00000590929 1450 ntBASIC30.14■■■□□ 2.41
COL4A5P29400 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL4A5P29400 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL4A5P29400 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
COL4A5P29400 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.12■■■□□ 2.41
COL4A5P29400 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL4A5P29400 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.12■■■□□ 2.41
COL4A5P29400 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL4A5P29400 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL4A5P29400 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL4A5P29400 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.11■■■□□ 2.41
COL4A5P29400 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.11■■■□□ 2.41
COL4A5P29400 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.11■■■□□ 2.41
COL4A5P29400 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL4A5P29400 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL4A5P29400 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
COL4A5P29400 AL139393.2-201ENST00000608721 2025 ntBASIC30.09■■■□□ 2.41
COL4A5P29400 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.09■■■□□ 2.41
COL4A5P29400 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL4A5P29400 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL4A5P29400 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL4A5P29400 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.08■■■□□ 2.41
COL4A5P29400 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
COL4A5P29400 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.07■■■□□ 2.4
COL4A5P29400 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.07■■■□□ 2.4
COL4A5P29400 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
COL4A5P29400 AC239859.2-201ENST00000444165 318 ntBASIC30.06■■■□□ 2.4
COL4A5P29400 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL4A5P29400 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL4A5P29400 AC019171.1-201ENST00000601251 1056 ntBASIC30.05■■■□□ 2.4
COL4A5P29400 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
COL4A5P29400 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
COL4A5P29400 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.04■■■□□ 2.4
COL4A5P29400 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
COL4A5P29400 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL4A5P29400 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.04■■■□□ 2.4
COL4A5P29400 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL4A5P29400 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
COL4A5P29400 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL4A5P29400 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
COL4A5P29400 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
COL4A5P29400 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
COL4A5P29400 AC087393.1-201ENST00000582896 145 ntBASIC30.03■■■□□ 2.4
COL4A5P29400 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.03■■■□□ 2.4
COL4A5P29400 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
COL4A5P29400 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL4A5P29400 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL4A5P29400 MIR935-201ENST00000401179 91 ntBASIC30.01■■■□□ 2.4
COL4A5P29400 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
COL4A5P29400 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
COL4A5P29400 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.01■■■□□ 2.39
COL4A5P29400 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
COL4A5P29400 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30■■■□□ 2.39
COL4A5P29400 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL4A5P29400 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL4A5P29400 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
COL4A5P29400 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
COL4A5P29400 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL4A5P29400 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC29.98■■■□□ 2.39
COL4A5P29400 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL4A5P29400 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL4A5P29400 GRAMD4P7-201ENST00000578182 1232 ntBASIC29.98■■■□□ 2.39
COL4A5P29400 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC29.98■■■□□ 2.39
COL4A5P29400 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL4A5P29400 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL4A5P29400 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC29.98■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms