Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
PGK1P00558 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PGK1P00558 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
PGK1P00558 GUSBP5-201ENST00000418136 578 ntBASIC27.75■■■□□ 2.03
PGK1P00558 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.75■■■□□ 2.03
PGK1P00558 MIR4508-201ENST00000584178 70 ntBASIC27.75■■■□□ 2.03
PGK1P00558 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
PGK1P00558 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PGK1P00558 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
PGK1P00558 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
PGK1P00558 THA1P-201ENST00000590384 1145 ntBASIC27.74■■■□□ 2.03
PGK1P00558 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
PGK1P00558 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC27.73■■■□□ 2.03
PGK1P00558 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.73■■■□□ 2.03
PGK1P00558 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC27.73■■■□□ 2.03
PGK1P00558 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC27.73■■■□□ 2.03
PGK1P00558 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
PGK1P00558 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
PGK1P00558 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PGK1P00558 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
PGK1P00558 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.71■■■□□ 2.03
PGK1P00558 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PGK1P00558 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
PGK1P00558 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC27.7■■■□□ 2.02
PGK1P00558 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
PGK1P00558 AC103724.3-201ENST00000564481 992 ntBASIC27.7■■■□□ 2.02
PGK1P00558 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC27.69■■■□□ 2.02
PGK1P00558 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.69■■■□□ 2.02
PGK1P00558 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PGK1P00558 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
PGK1P00558 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PGK1P00558 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
PGK1P00558 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
PGK1P00558 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.68■■■□□ 2.02
PGK1P00558 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.68■■■□□ 2.02
PGK1P00558 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
PGK1P00558 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC27.67■■■□□ 2.02
PGK1P00558 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
PGK1P00558 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
PGK1P00558 PRTG-204ENST00000561292 833 ntTSL 3 BASIC27.67■■■□□ 2.02
PGK1P00558 AC019069.1-201ENST00000610008 1333 ntBASIC27.67■■■□□ 2.02
PGK1P00558 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
PGK1P00558 AL031848.2-201ENST00000607670 837 ntBASIC27.66■■■□□ 2.02
PGK1P00558 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
PGK1P00558 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PGK1P00558 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC27.65■■■□□ 2.02
PGK1P00558 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PGK1P00558 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
PGK1P00558 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
PGK1P00558 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC27.64■■■□□ 2.02
PGK1P00558 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
PGK1P00558 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.02
PGK1P00558 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
PGK1P00558 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC27.64■■■□□ 2.02
PGK1P00558 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC27.63■■■□□ 2.01
PGK1P00558 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
PGK1P00558 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.63■■■□□ 2.01
PGK1P00558 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.63■■■□□ 2.01
PGK1P00558 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
PGK1P00558 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC27.62■■■□□ 2.01
PGK1P00558 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
PGK1P00558 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.62■■■□□ 2.01
PGK1P00558 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
PGK1P00558 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
PGK1P00558 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC27.61■■■□□ 2.01
PGK1P00558 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
PGK1P00558 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC27.61■■■□□ 2.01
PGK1P00558 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
PGK1P00558 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
PGK1P00558 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
PGK1P00558 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
PGK1P00558 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
PGK1P00558 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
PGK1P00558 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
PGK1P00558 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC27.58■■■□□ 2.01
PGK1P00558 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
PGK1P00558 AL356441.2-201ENST00000443009 864 ntBASIC27.58■■■□□ 2.01
PGK1P00558 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.58■■■□□ 2.01
PGK1P00558 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
PGK1P00558 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
PGK1P00558 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.58■■■□□ 2.01
PGK1P00558 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
PGK1P00558 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
PGK1P00558 WHAMMP3-201ENST00000611636 1609 ntBASIC27.56■■■□□ 2
PGK1P00558 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.56■■■□□ 2
PGK1P00558 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.56■■■□□ 2
PGK1P00558 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.56■■■□□ 2
PGK1P00558 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
PGK1P00558 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC27.55■■■□□ 2
PGK1P00558 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
PGK1P00558 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.55■■■□□ 2
PGK1P00558 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
PGK1P00558 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC27.55■■■□□ 2
PGK1P00558 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.54■■■□□ 2
PGK1P00558 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
PGK1P00558 AC239859.2-201ENST00000444165 318 ntBASIC27.53■■■□□ 2
PGK1P00558 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.53■■■□□ 2
PGK1P00558 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.53■■■□□ 2
PGK1P00558 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.53■■■□□ 2
PGK1P00558 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms