Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.94■■□□□ 1.42
VPS4BO75351 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.94■■□□□ 1.42
VPS4BO75351 AC135731.1-201ENST00000569415 2548 ntBASIC23.93■■□□□ 1.42
VPS4BO75351 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.93■■□□□ 1.42
VPS4BO75351 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.93■■□□□ 1.42
VPS4BO75351 AC110285.7-201ENST00000624417 1536 ntBASIC23.93■■□□□ 1.42
VPS4BO75351 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.93■■□□□ 1.42
VPS4BO75351 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VPS4BO75351 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VPS4BO75351 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VPS4BO75351 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS4BO75351 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.91■■□□□ 1.42
VPS4BO75351 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS4BO75351 GPX1-201ENST00000419349 1106 ntBASIC23.91■■□□□ 1.42
VPS4BO75351 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.91■■□□□ 1.42
VPS4BO75351 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.91■■□□□ 1.42
VPS4BO75351 AC142472.1-201ENST00000612013 1741 ntBASIC23.9■■□□□ 1.42
VPS4BO75351 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS4BO75351 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
VPS4BO75351 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.9■■□□□ 1.42
VPS4BO75351 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS4BO75351 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS4BO75351 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS4BO75351 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS4BO75351 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS4BO75351 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS4BO75351 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.89■■□□□ 1.41
VPS4BO75351 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
VPS4BO75351 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
VPS4BO75351 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VPS4BO75351 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
VPS4BO75351 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS4BO75351 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
VPS4BO75351 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.88■■□□□ 1.41
VPS4BO75351 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VPS4BO75351 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS4BO75351 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.88■■□□□ 1.41
VPS4BO75351 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.88■■□□□ 1.41
VPS4BO75351 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
VPS4BO75351 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.87■■□□□ 1.41
VPS4BO75351 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VPS4BO75351 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS4BO75351 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS4BO75351 RNF126P1-201ENST00000567452 1320 ntBASIC23.86■■□□□ 1.41
VPS4BO75351 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS4BO75351 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS4BO75351 WHAMMP3-201ENST00000611636 1609 ntBASIC23.86■■□□□ 1.41
VPS4BO75351 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VPS4BO75351 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.86■■□□□ 1.41
VPS4BO75351 AC020928.2-201ENST00000588717 2197 ntBASIC23.86■■□□□ 1.41
VPS4BO75351 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS4BO75351 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.85■■□□□ 1.41
VPS4BO75351 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.85■■□□□ 1.41
VPS4BO75351 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.85■■□□□ 1.41
VPS4BO75351 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS4BO75351 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
VPS4BO75351 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
VPS4BO75351 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS4BO75351 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS4BO75351 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS4BO75351 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
VPS4BO75351 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
VPS4BO75351 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
VPS4BO75351 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
VPS4BO75351 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
VPS4BO75351 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.4
VPS4BO75351 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS4BO75351 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS4BO75351 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS4BO75351 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.82■■□□□ 1.4
VPS4BO75351 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.82■■□□□ 1.4
VPS4BO75351 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS4BO75351 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
VPS4BO75351 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS4BO75351 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS4BO75351 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS4BO75351 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS4BO75351 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS4BO75351 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS4BO75351 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VPS4BO75351 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS4BO75351 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.79■■□□□ 1.4
VPS4BO75351 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS4BO75351 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
VPS4BO75351 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
VPS4BO75351 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
VPS4BO75351 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS4BO75351 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.78■■□□□ 1.4
VPS4BO75351 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS4BO75351 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS4BO75351 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS4BO75351 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
VPS4BO75351 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
VPS4BO75351 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VPS4BO75351 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS4BO75351 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS4BO75351 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS4BO75351 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS4BO75351 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.77■■□□□ 1.4
VPS4BO75351 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms