Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV1-2A0A0B4J238 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.34■■□□□ 1.01
TRAV1-2A0A0B4J238 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV1-2A0A0B4J238 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.33■■□□□ 1.01
TRAV1-2A0A0B4J238 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV1-2A0A0B4J238 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV1-2A0A0B4J238 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.33■■□□□ 1.01
TRAV1-2A0A0B4J238 AC005559.1-201ENST00000589661 871 ntBASIC21.33■■□□□ 1.01
TRAV1-2A0A0B4J238 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV1-2A0A0B4J238 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.33■■□□□ 1
TRAV1-2A0A0B4J238 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
TRAV1-2A0A0B4J238 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.31■■□□□ 1
TRAV1-2A0A0B4J238 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.31■■□□□ 1
TRAV1-2A0A0B4J238 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV1-2A0A0B4J238 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV1-2A0A0B4J238 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAV1-2A0A0B4J238 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 AL139125.2-201ENST00000623134 1869 ntBASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV1-2A0A0B4J238 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 AC022211.4-201ENST00000625094 2161 ntBASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TRAV1-2A0A0B4J238 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV1-2A0A0B4J238 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV1-2A0A0B4J238 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV1-2A0A0B4J238 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
TRAV1-2A0A0B4J238 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRAV1-2A0A0B4J238 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRAV1-2A0A0B4J238 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 AC138932.3-201ENST00000567634 1902 ntBASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV1-2A0A0B4J238 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
TRAV1-2A0A0B4J238 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 AC110285.7-201ENST00000624417 1536 ntBASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
TRAV1-2A0A0B4J238 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV1-2A0A0B4J238 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.25■□□□□ 0.99
TRAV1-2A0A0B4J238 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV1-2A0A0B4J238 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.23■□□□□ 0.99
TRAV1-2A0A0B4J238 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV1-2A0A0B4J238 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.22■□□□□ 0.99
TRAV1-2A0A0B4J238 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAV1-2A0A0B4J238 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV1-2A0A0B4J238 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV1-2A0A0B4J238 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.21■□□□□ 0.99
TRAV1-2A0A0B4J238 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV1-2A0A0B4J238 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV1-2A0A0B4J238 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.2■□□□□ 0.98
TRAV1-2A0A0B4J238 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV1-2A0A0B4J238 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms