Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 KRT18P48-201ENST00000434763 852 ntBASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 YBX1P2-201ENST00000489612 999 ntBASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 LTB4R2-202ENST00000528054 3092 ntBASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIF3AQ9Y2N7 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 FAM8A6P-201ENST00000407496 1135 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 DDX43P3-201ENST00000441064 443 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 AC139887.4-201ENST00000607877 719 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 AC009154.2-201ENST00000621177 724 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 AL645608.8-201ENST00000606034 2086 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 PP12613-201ENST00000424958 2230 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 LINC00304-203ENST00000565008 1864 ntBASIC16.1■□□□□ 0.17
HIF3AQ9Y2N7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AL138688.1-201ENST00000624851 1594 ntBASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AC004263.2-201ENST00000617183 678 ntBASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AC009949.1-201ENST00000623048 1830 ntBASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 KRT8P47-201ENST00000604727 1398 ntBASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 AC139713.2-201ENST00000641328 2723 ntBASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.09■□□□□ 0.17
HIF3AQ9Y2N7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms